miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01903;mir-500;AAWR02023860.1/12501-12589 9796:Equus caballus
(horse)
Length = 89
Score = 167 bits (84), Expect = 3e-41
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 65
Query: 61 ggcaaggattccagagggcgaggc 84
||||||||||||||||||||||||
Sbjct: 66 ggcaaggattccagagggcgaggc 89
>RF01903;mir-500;CABD01395115.2/3352-3441 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 90
Score = 93.7 bits (47), Expect = 3e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 1 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 60
||||| ||||||| ||| || |||||||||||||||||||||| |||||||||||||| |
Sbjct: 6 gctcttcctctctaatcgtttgtccctgggtgagagtgctttctgaatgcaatgcacccg 65
Query: 61 ggcaaggattc 71
|||||||||||
Sbjct: 66 ggcaaggattc 76
>RF01903;mir-500;ABRT010259438.1/4434-4523 9478:Tarsius syrichta
(Philippine tarsier)
Length = 90
Score = 91.7 bits (46), Expect = 1e-18
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 7 cctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctgggcaag 66
||||||| |||||| |||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 12 cctctctaatcctttgtccctgggtgagagtgctttctaaatgcaatgcacccgggcaag 71
Query: 67 gattcc 72
||||||
Sbjct: 72 gattcc 77
>RF01903;mir-500;ABRR01444762.1/851-940 30538:Lama pacos (alpaca)
Length = 90
Score = 83.8 bits (42), Expect = 3e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 6 ccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctgggcaa 65
|||||||| |||||| | |||||||||||||||| || |||||||||||||||||||||
Sbjct: 11 ccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaa 70
Query: 66 ggattc 71
||||||
Sbjct: 71 ggattc 76
>RF01903;mir-500;ABRP01179571.1/608-696 132908:Pteropus vampyrus
(large flying fox)
Length = 89
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 1 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 60
|||| ||||||||||||||| ||| |||| ||||||||||||| |||||||||||| |
Sbjct: 6 gctccccctctctcatcctttgtctctggttgagagtgctttcaaaatgcaatgcactgg 65
Query: 61 ggcaaggattc 71
|||||||||||
Sbjct: 66 ggcaaggattc 76
>RF01903;mir-500;AAQQ01366224.1/356-445 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 90
Score = 77.8 bits (39), Expect = 2e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 1 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 60
|||| |||||||| |||||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 6 gctccccctctctaatccttgctatctgggtgagagtgctttccgaatgcagtgcacctg 65
Query: 61 ggcaagg 67
|||||||
Sbjct: 66 ggcaagg 72
>RF01903;mir-500;AAGW01126437.1/5760-5849 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 1 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 60
|||| |||||||| |||||| | |||||||||||||||| | ||||||||||||||||
Sbjct: 6 gctccccctctctaatccttgctacctgggtgagagtgctaactgaatgcaatgcacctg 65
Query: 61 ggcaaggattc 71
|||||||||||
Sbjct: 66 ggcaaggattc 76
>RF01903;mir-500;AALT01601729.1/2904-2815 42254:Sorex araneus
(European shrew)
Length = 90
Score = 75.8 bits (38), Expect = 8e-14
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 3 tctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctggg 62
|||||||||| |||||| | ||||||||||| ||||||| ||||||||||||||||||
Sbjct: 8 tctccctctcgaatccttgttacctgggtgagaatgctttcagaatgcaatgcacctggg 67
Query: 63 -caaggattccaga 75
|||||||||||||
Sbjct: 68 acaaggattccaga 81
>RF01903;mir-500;ABRO01329853.1/364-457 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 94
Score = 75.8 bits (38), Expect = 8e-14
Identities = 63/71 (88%), Gaps = 4/71 (5%)
Strand = Plus / Plus
Query: 7 cctctctcatccttcgtccctgggtgaga----gtgctttccgaatgcaatgcacctggg 62
||||||| |||||| |||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 12 cctctctaatcctttgtccctgggtgagaatgcttgctttctgaatgcaatgcacctggg 71
Query: 63 caaggattcca 73
|||||||||||
Sbjct: 72 caaggattcca 82
>RF01903;mir-500;AAPY01377727.1/1385-1474 37347:Tupaia belangeri
(northern tree shrew)
Length = 90
Score = 71.9 bits (36), Expect = 1e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 8 ctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctgggcaagg 67
|||||| |||||| | ||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 13 ctctctaatccttgctacctgggtgagagtgctttctgaatgcaattcacctaggcaagg 72
Query: 68 attc 71
||||
Sbjct: 73 attc 76
>RF01903;mir-500;AAKN02053571.1/48125-48214 10141:Cavia porcellus
(domestic guinea pig)
Length = 90
Score = 69.9 bits (35), Expect = 5e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 1 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 60
|||| |||||||| |||||| | |||||||||||||||||| ||||||| ||||||||
Sbjct: 6 gctccccctctctaatccttgctacctgggtgagagtgctttgtgaatgcagtgcacctg 65
Query: 61 ggcaagg 67
|||||||
Sbjct: 66 ggcaagg 72
>RF01903;mir-500;AALT01601729.1/736-647 42254:Sorex araneus
(European shrew)
Length = 90
Score = 63.9 bits (32), Expect = 3e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 8 ctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctgggcaagg 67
|||||| |||||| | ||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 13 ctctctaatccttgctacctgggtgagaatgcttttgaaatgcaatgcacctgggcaagg 72
Query: 68 attc 71
||||
Sbjct: 73 attc 76
>RF01903;mir-500;AAFC03003598.1/91611-91523 9913:Bos taurus
(cattle)
Length = 89
Score = 61.9 bits (31), Expect = 1e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 29 ggtgagagtgctttccgaatgcaatgcacctgggcaaggattc 71
|||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 33 ggtgagagtgctttgtgaatgcaatccacctgggcaaggattc 75
>RF01903;mir-500;AANU01113554.1/19321-19232 9544:Macaca mulatta
(rhesus monkey)
Length = 90
Score = 61.9 bits (31), Expect = 1e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 25 cctgggtgagagtgctttccgaatgcaatgcacctgggcaaggattc 71
||||||||||||||||||| ||||||| |||||| |||||||||||
Sbjct: 30 cctgggtgagagtgctttctgaatgcagtgcacccaggcaaggattc 76
>RF01903;mir-500;AAEX02025396.1/212337-212249 9615:Canis lupus
familiaris (dog)
Length = 89
Score = 56.0 bits (28), Expect = 7e-08
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 11 tctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacc 58
||||||||| ||||||| |||||||||||||| |||||||||||||
Sbjct: 16 tctcatcctctgtccctgagtgagagtgctttctaaatgcaatgcacc 63
>RF01903;mir-500;AL663104.17/15029-14940 10090:Mus musculus (house
mouse)
Length = 90
Score = 56.0 bits (28), Expect = 7e-08
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 7 cctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctgggcaag 66
||||||| |||||| |||||||||||| | |||| | | |||||||||||| |||||||
Sbjct: 12 cctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccgggcaag 71
Query: 67 gatt 70
||||
Sbjct: 72 gatt 75
>RF01903;mir-500;AALT01601729.1/3692-3602 42254:Sorex araneus
(European shrew)
Length = 91
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 atgcaatgcacctgggcaaggattc 71
|||||||||||||||||||||||||
Sbjct: 52 atgcaatgcacctgggcaaggattc 76
>RF01903;mir-500;AAFC03003598.1/85766-85678 9913:Bos taurus
(cattle)
Length = 89
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 atgcaatgcacctgggcaaggattc 71
|||||||||||||||||||||||||
Sbjct: 51 atgcaatgcacctgggcaaggattc 75
>RF01903;mir-500;ABDC01288936.1/7113-7202 30608:Microcebus murinus
(gray mouse lemur)
Length = 90
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 atgcaatgcacctgggcaaggattc 71
|||||||||||||||||||||||||
Sbjct: 52 atgcaatgcacctgggcaaggattc 76
>RF01903;mir-500;AAGW01126437.1/3638-3727 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 tgcaatgcacctgggcaaggatt 70
|||||||||||||||||||||||
Sbjct: 52 tgcaatgcacctgggcaaggatt 74
>RF01903;mir-500;AAGU02358869.1/7585-7674 9785:Loxodonta africana
(African savanna elephant)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 46 aatgcaatgcacctgggcaaggattc 71
|||||||||||||| |||||||||||
Sbjct: 51 aatgcaatgcacctaggcaaggattc 76
