miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01903;mir-500;AAGU02358869.1/7585-7674 9785:Loxodonta africana
(African savanna elephant)
Length = 90
Score = 143 bits (72), Expect = 4e-34
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 tgctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacct 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tgctccctctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacct 64
Query: 61 gggcaaggattcagagaggg 80
|||||||||||||||||||
Sbjct: 65 aggcaaggattcagagaggg 84
>RF01903;mir-500;AAFC03003598.1/85766-85678 9913:Bos taurus
(cattle)
Length = 89
Score = 123 bits (62), Expect = 3e-28
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 11 ctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggat 70
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 14 ctctaatccttgctctctgggtgctagtgctgtctccatgcaatgcacctgggcaaggat 73
Query: 71 tcagagaggg 80
||||||||||
Sbjct: 74 tcagagaggg 83
>RF01903;mir-500;ABDC01288936.1/7113-7202 30608:Microcebus murinus
(gray mouse lemur)
Length = 90
Score = 119 bits (60), Expect = 5e-27
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 1 tgctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacct 60
|||| ||||||||||||||||||| ||||||||||| |||||| || |||||||||||||
Sbjct: 5 tgcttcccctctctaatccttgctgtctgggtgctaatgctgtgtcgatgcaatgcacct 64
Query: 61 gggcaaggattcagagaggg 80
||||||||||||||||||||
Sbjct: 65 gggcaaggattcagagaggg 84
>RF01903;mir-500;ABRR01444762.1/851-940 30538:Lama pacos (alpaca)
Length = 90
Score = 107 bits (54), Expect = 2e-23
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 5 ccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggc 64
||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||
Sbjct: 9 ccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggc 68
Query: 65 aaggattcagagag 78
|||||||| |||||
Sbjct: 69 aaggattctgagag 82
>RF01903;mir-500;AAGW01126437.1/5760-5849 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 107 bits (54), Expect = 2e-23
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 1 tgctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacct 60
||||||||||||||||||||||||| ||||||| |||||| || ||||||||||||||
Sbjct: 5 tgctccccctctctaatccttgctacctgggtgagagtgctaactgaatgcaatgcacct 64
Query: 61 gggcaaggattcagagag 78
||||||||||||||||||
Sbjct: 65 gggcaaggattcagagag 82
>RF01903;mir-500;AALT01601729.1/3692-3602 42254:Sorex araneus
(European shrew)
Length = 91
Score = 95.6 bits (48), Expect = 8e-20
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 9 ctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaagg 68
||||||||||||||||| |||| |||||||||| ||| |||||||||||||||||||||
Sbjct: 13 ctctctaatccttgctacctggttgctagtgctttctatatgcaatgcacctgggcaagg 72
Query: 69 attcagag 76
||||||||
Sbjct: 73 attcagag 80
>RF01903;mir-500;AAQQ01366224.1/356-445 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 90
Score = 85.7 bits (43), Expect = 8e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 2 gctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctg 61
|||||||||||||||||||||||||||||||| |||||| || |||||| ||||||||
Sbjct: 6 gctccccctctctaatccttgctatctgggtgagagtgctttccgaatgcagtgcacctg 65
Query: 62 ggcaagg 68
|||||||
Sbjct: 66 ggcaagg 72
>RF01903;mir-500;AAPY01377727.1/1385-1474 37347:Tupaia belangeri
(northern tree shrew)
Length = 90
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 2 gctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctg 61
|||||| ||||||||||||||||| ||||||| |||||| ||| |||||||| |||||
Sbjct: 6 gctccctctctctaatccttgctacctgggtgagagtgctttctgaatgcaattcaccta 65
Query: 62 ggcaaggattc 72
|||||||||||
Sbjct: 66 ggcaaggattc 76
>RF01903;mir-500;AAKN02053571.1/48125-48214 10141:Cavia porcellus
(domestic guinea pig)
Length = 90
Score = 77.8 bits (39), Expect = 2e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 2 gctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctg 61
|||||||||||||||||||||||| ||||||| |||||| | | |||||| ||||||||
Sbjct: 6 gctccccctctctaatccttgctacctgggtgagagtgctttgtgaatgcagtgcacctg 65
Query: 62 ggcaagg 68
|||||||
Sbjct: 66 ggcaagg 72
>RF01903;mir-500;AAIY01038584.1/399-317 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 83
Score = 71.9 bits (36), Expect = 1e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 24 tatctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattcagagagg 79
|||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||
Sbjct: 24 tatctgggtgctagtgctatctcaatgcaatgcacccaggcaaagattctgagagg 79
>RF01903;mir-500;AANU01113554.1/19321-19232 9544:Macaca mulatta
(rhesus monkey)
Length = 90
Score = 69.9 bits (35), Expect = 5e-12
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 2 gctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctg 61
||||||||| |||||||||||||| ||||||| |||||| ||| |||||| ||||||
Sbjct: 6 gctccccctgtctaatccttgctacctgggtgagagtgctttctgaatgcagtgcaccca 65
Query: 62 ggcaaggattc 72
|||||||||||
Sbjct: 66 ggcaaggattc 76
>RF01903;mir-500;AALT01601729.1/736-647 42254:Sorex araneus
(European shrew)
Length = 90
Score = 65.9 bits (33), Expect = 7e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 4 tccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctggg 63
|||| ||||||||||||||||| ||||||| | |||| | |||||||||||||||||
Sbjct: 8 tccctctctctaatccttgctacctgggtgagaatgcttttgaaatgcaatgcacctggg 67
Query: 64 caaggattc 72
|||||||||
Sbjct: 68 caaggattc 76
>RF01903;mir-500;ABRT010259438.1/4434-4523 9478:Tarsius syrichta
(Philippine tarsier)
Length = 90
Score = 65.9 bits (33), Expect = 7e-11
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 8 cctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaag 67
|||||||||||||| | ||||||| |||||| ||| ||||||||||||| |||||||
Sbjct: 12 cctctctaatcctttgtccctgggtgagagtgctttctaaatgcaatgcacccgggcaag 71
Query: 68 gattcagagaggg 80
||||| |||||||
Sbjct: 72 gattccgagaggg 84
>RF01903;mir-500;AAKN02053571.1/46149-46243 10141:Cavia porcellus
(domestic guinea pig)
Length = 95
Score = 63.9 bits (32), Expect = 3e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 12 tctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaag 67
|||||||||||||| | | ||| |||||||||||||||||||||| |||||||||
Sbjct: 16 tctaatccttgctacccgagtgagagtgctgtctcaatgcaatgcatctgggcaag 71
>RF01903;mir-500;ABRT010259437.1/774-863 9478:Tarsius syrichta
(Philippine tarsier)
Length = 90
Score = 61.9 bits (31), Expect = 1e-09
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 9 ctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaagg 68
|||| ||||||||| || |||| |||||||||| ||| |||||||| ||||||||||||
Sbjct: 13 ctctttaatccttgatacctgg-tgctagtgctttctacatgcaatggacctgggcaagg 71
Query: 69 attcaga 75
|||||||
Sbjct: 72 attcaga 78
>RF01903;mir-500;CABD01395115.2/3352-3441 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 90
Score = 60.0 bits (30), Expect = 4e-09
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 27 ctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattcagagaggg 80
||||||| |||||| ||| ||||||||||||| |||||||||||| |||||||
Sbjct: 31 ctgggtgagagtgctttctgaatgcaatgcacccgggcaaggattctgagaggg 84
>RF01903;mir-500;AAGU02358869.1/3530-3617 9785:Loxodonta africana
(African savanna elephant)
Length = 88
Score = 60.0 bits (30), Expect = 4e-09
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 3 ctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgg 62
|||||| |||||||||||| || ||||||| |||||||||||||||| ||||| |||
Sbjct: 7 ctccccttctctaatccttagtacctgggtgtgggtgctgtctcaatgcagtgcacatgg 66
Query: 63 gcaaggattc 72
||||| ||||
Sbjct: 67 gcaagcattc 76
>RF01903;mir-500;AAPY01377726.1/2576-2664 37347:Tupaia belangeri
(northern tree shrew)
Length = 89
Score = 58.0 bits (29), Expect = 2e-08
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 6 cccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggca 65
||||| |||||||||||||| ||||||| | |||| |||| |||||||| ||||| ||
Sbjct: 9 cccctatctaatccttgctacctgggtgagaatgctatctctgtgcaatgctcctggaca 68
Query: 66 aggattcagagag 78
||||||| |||||
Sbjct: 69 aggattctgagag 81
>RF01903;mir-500;AAWR02023860.1/12501-12589 9796:Equus caballus
(horse)
Length = 89
Score = 56.0 bits (28), Expect = 7e-08
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 1 tgctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacct 60
||||| |||||||| |||||| | ||||||| |||||| || ||||||||||||||
Sbjct: 5 tgctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacct 64
Query: 61 gggcaaggattc 72
||||||||||||
Sbjct: 65 gggcaaggattc 76
>RF01903;mir-500;AAGW01126437.1/3638-3727 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 56.0 bits (28), Expect = 7e-08
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 9 ctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaagg 68
|||||||||||||| || |||| || ||||||| ||| ||||||||||||||||||||
Sbjct: 13 ctctctaatccttgatacctgg-tgttagtgctttctatgtgcaatgcacctgggcaagg 71
Query: 69 attcagag 76
||| ||||
Sbjct: 72 atttagag 79
>RF01903;mir-500;ABRO01329853.1/364-457 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 94
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 38 tgctgtctcaatgcaatgcacctgggcaaggattc 72
|||| ||| ||||||||||||||||||||||||||
Sbjct: 46 tgctttctgaatgcaatgcacctgggcaaggattc 80
>RF01903;mir-500;AAKN02053571.1/44085-44175 10141:Cavia porcellus
(domestic guinea pig)
Length = 91
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 48 atgcaatgcacctgggcaaggattcagag 76
||||| |||||||||||||||||||||||
Sbjct: 52 atgcagtgcacctgggcaaggattcagag 80
>RF01903;mir-500;ABRP01179571.1/608-696 132908:Pteropus vampyrus
(large flying fox)
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 1 tgctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacct 60
|||||||||||||| |||||| | ||||| || |||||| || ||||||||||||
Sbjct: 5 tgctccccctctctcatcctttgtctctggttgagagtgctttcaaaatgcaatgcactg 64
Query: 61 gggcaaggattc 72
||||||||||||
Sbjct: 65 gggcaaggattc 76
>RF01903;mir-500;AALT01601729.1/2904-2815 42254:Sorex araneus
(European shrew)
Length = 90
Score = 46.1 bits (23), Expect = 7e-05
Identities = 57/67 (85%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 7 ccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctggg-ca 65
||||||| |||||||| || ||||||| | |||| || ||||||||||||||||| ||
Sbjct: 11 ccctctcgaatccttgttacctgggtgagaatgctttcagaatgcaatgcacctgggaca 70
Query: 66 aggattc 72
|||||||
Sbjct: 71 aggattc 77
>RF01903;mir-500;AAFC03003598.1/91611-91523 9913:Bos taurus
(cattle)
Length = 89
Score = 46.1 bits (23), Expect = 7e-05
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 6 cccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggca 65
|||||||||||| |||||| | |||| |||||| | | |||||||| ||||||||||
Sbjct: 9 cccctctctaattcttgctccccaggtgagagtgctttgtgaatgcaatccacctgggca 68
Query: 66 aggattc 72
|||||||
Sbjct: 69 aggattc 75
>RF01903;mir-500;ABRQ01341134.1/4896-4985 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgctccccctctctaatccttg 22
||||||||||||||||||||||
Sbjct: 5 tgctccccctctctaatccttg 26
