miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00753;mir-503;AAEX02004019.1/2977-3047 9615:Canis lupus
familiaris (dog)
Length = 71
Score = 117 bits (59), Expect = 2e-26
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagtactgcagtgggcgatcggtgctctggagtattgttcctg 60
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||
Sbjct: 1 tgccctagcagcgggaacagtactgcagtgggcaatcggtgttctggagtattgtttctg 60
Query: 61 ctgcccgggca 71
|||||||||||
Sbjct: 61 ctgcccgggca 71
>RF00753;mir-503;AAGV020284257.1/2168-2098 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 71
Score = 93.7 bits (47), Expect = 3e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagtactgcagtgggcgatcggtgctctggagtattgttcctg 60
|||||||||||||||||||||||||||| || ||| |||||||||| ||||||||||||
Sbjct: 1 tgccctagcagcgggaacagtactgcagcaggtgattggtgctctggggtattgttcctg 60
Query: 61 ctgcccgggca 71
||||| |||||
Sbjct: 61 ctgcctgggca 71
>RF00753;mir-503;AAGU02249221.1/641-573 9785:Loxodonta africana
(African savanna elephant)
Length = 69
Score = 87.7 bits (44), Expect = 2e-17
Identities = 65/71 (91%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagtactgcagtgggcgatcggtgctctggagtattgttcctg 60
|||||||||||||||||||||||||||| ||||| ||| |||||||||||||||| | |
Sbjct: 1 tgccctagcagcgggaacagtactgcagcgggcgctcg--gctctggagtattgttgccg 58
Query: 61 ctgcccgggca 71
|||||||||||
Sbjct: 59 ctgcccgggca 69
>RF00753;mir-503;AAKN02053360.1/159109-159039 10141:Cavia
porcellus (domestic guinea pig)
Length = 71
Score = 85.7 bits (43), Expect = 7e-17
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagtactgcagtgggcgatcggtgctctggagtattgttcctg 60
|||||||||||||||||||||||||||||| | ||| |||||||||||| ||||| |||
Sbjct: 1 tgccctagcagcgggaacagtactgcagtgagggatttgtgctctggagtgttgtttctg 60
Query: 61 ctgcccgggca 71
||||| |||||
Sbjct: 61 ctgccagggca 71
>RF00753;mir-503;AANN01675780.1/1012-1082 9365:Erinaceus europaeus
(western European hedgehog)
Length = 71
Score = 73.8 bits (37), Expect = 2e-13
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagtactgcagtgggcgatcggtgctctggagtattgttcctg 60
||||||||||||||||||||||||||||| |||||| | ||||||||||| |||| |||
Sbjct: 1 tgccctagcagcgggaacagtactgcagtaagcgatcagggctctggagtaatgtttctg 60
Query: 61 c 61
|
Sbjct: 61 c 61
>RF00753;mir-503;AANU01115741.1/19317-19387 9544:Macaca mulatta
(rhesus monkey)
Length = 71
Score = 73.8 bits (37), Expect = 2e-13
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagtactgcagtgggcgatcggtgctctggagtattgttcctg 60
||||||||||||||||||||| |||||||| | |||| || ||||||||||||||| | |
Sbjct: 1 tgccctagcagcgggaacagttctgcagtgagtgatcagtactctggagtattgtttccg 60
Query: 61 ctgcc 65
|||||
Sbjct: 61 ctgcc 65
>RF00753;mir-503;BX649621.5/161937-161867 10090:Mus musculus
(house mouse)
Length = 71
Score = 71.9 bits (36), Expect = 1e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagtactgcagtgggcgatcggtgctctggagtattgtt 56
|||||||||||||||||||||||||||||| | | | ||||| |||||||||||||
Sbjct: 1 tgccctagcagcgggaacagtactgcagtgagtgtttggtgccctggagtattgtt 56
>RF00753;mir-503;AAGW01455164.1/90-19 9986:Oryctolagus cuniculus
(rabbit)
Length = 72
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagtactgcagtg 30
||||||||||||||||||||||||||||||
Sbjct: 1 tgccctagcagcgggaacagtactgcagtg 30
>RF00753;mir-503;AAIY01107643.1/326-392 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 67
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagtactgcagtg 30
||||||||||||||||||||||||||||||
Sbjct: 1 tgccctagcagcgggaacagtactgcagtg 30
>RF00753;mir-503;ABRQ01123748.1/1011-942 9813:Procavia capensis
(cape rock hyrax)
Length = 70
Score = 58.0 bits (29), Expect = 1e-08
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagtactgcagtgggcgatcggtgctctggagtattgttcctg 60
|||||||||||||||||||||| |||| ||| |||| |||||||||||||||| |||
Sbjct: 1 tgccctagcagcgggaacagtattgcaccatgcgttcgg-gctctggagtattgttgctg 59
Query: 61 ctgcc 65
|||||
Sbjct: 60 ctgcc 64
>RF00753;mir-503;ABRO01386381.1/924-854 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ctagcagcgggaacagtactgc 26
||||||||||||||||||||||
Sbjct: 5 ctagcagcgggaacagtactgc 26
