miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01897;mir-188;AAEX02025396.1/219014-218909 9615:Canis lupus
familiaris (dog)
Length = 106
Score = 163 bits (82), Expect = 5e-40
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 4 ttgctttctctcttacatgccttgagtgtaggaccgttggcatcttaattaccctcccac 63
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 11 ttgctttctctcttacatgccttgagtgtaggaccgttggtatcttaattaccctcccac 70
Query: 64 acccaaggcttgcaggagggcaagcc 89
||||||||||||||||||||||||||
Sbjct: 71 acccaaggcttgcaggagggcaagcc 96
>RF01897;mir-188;AAHY01206841.1/3828-3933 10090:Mus musculus
(house mouse)
Length = 106
Score = 147 bits (74), Expect = 3e-35
Identities = 86/90 (95%)
Strand = Plus / Plus
Query: 1 gatttgctttctctcttacatgccttgagtgtaggaccgttggcatcttaattaccctcc 60
|||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 8 gatttgctttttctcttccatgccttgagtgtaggaccgttgacatcttaattaccctcc 67
Query: 61 cacacccaaggcttgcaggagggcaagcct 90
||||||||||||||||||||| ||||||||
Sbjct: 68 cacacccaaggcttgcaggagagcaagcct 97
>RF01897;mir-188;ABRO01329850.1/1587-1692 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 106
Score = 141 bits (71), Expect = 2e-33
Identities = 83/87 (95%)
Strand = Plus / Plus
Query: 4 ttgctttctctcttacatgccttgagtgtaggaccgttggcatcttaattaccctcccac 63
|||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 11 ttgctttctctccttcatgccttgagtgtaggaccgttagcatcttaattaccctcccac 70
Query: 64 acccaaggcttgcaggagggcaagcct 90
|||||||||||||||||| ||||||||
Sbjct: 71 acccaaggcttgcaggagagcaagcct 97
>RF01897;mir-188;AAGW01126437.1/520-625 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 131 bits (66), Expect = 2e-30
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 4 ttgctttctctcttacatgccttgagtgtaggaccgttggcatcttaattaccctcccac 63
|||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 11 ttgctttctctcttccatgccttgagtgtaggactgttggaatcttaattaccctcccac 70
Query: 64 acccaaggcttgcaggag 81
||||||||||||||||||
Sbjct: 71 acccaaggcttgcaggag 88
>RF01897;mir-188;AAGU02358860.1/2697-2802 9785:Loxodonta africana
(African savanna elephant)
Length = 106
Score = 115 bits (58), Expect = 1e-25
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 12 tctcttacatgccttgagtgtaggaccgttggcatcttaattaccctcccacacccaagg 71
|||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||
Sbjct: 19 tctcttacatgccttgagtgtaggaccgttggtatattaattatcctcccacacccaagg 78
Query: 72 cttgcaggag 81
||||||||||
Sbjct: 79 cttgcaggag 88
>RF01897;mir-188;AANN01828942.1/2423-2529 9365:Erinaceus europaeus
(western European hedgehog)
Length = 107
Score = 111 bits (56), Expect = 2e-24
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 4 ttgctttctctcttacatgccttgagtgtaggaccgttggcatcttaattaccctcccac 63
||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 11 ttgctttgtctcttgcatgccttgagtgtaggaccgttggcatctctgttaccctcccac 70
Query: 64 acccaaggcttgcagg 79
||||||||||||||||
Sbjct: 71 acccaaggcttgcagg 86
>RF01897;mir-188;ABRQ01388379.1/2083-2188 9813:Procavia capensis
(cape rock hyrax)
Length = 106
Score = 97.6 bits (49), Expect = 2e-20
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 1 gatttgctttctctcttacatgccttgagtgtaggaccgttggcatcttaattaccctcc 60
|||||||||| ||||||||||||||||||||||||| ||| |||| ||| ||| |||||
Sbjct: 8 gatttgctttttctcttacatgccttgagtgtaggaatgttagcatattagttatcctcc 67
Query: 61 cacacccaaggcttgcaggag 81
||||||||||| |||||||||
Sbjct: 68 cacacccaaggtttgcaggag 88
