miRNEST 2.0, an integrative microRNA resource :: BLAST
>27989_mml-mir-539:mirbase
Length = 78
Score = 139 bits (70), Expect = 3e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 1 atacttgaggagaaattatccttgctgtgttcgctttatttgtgatgaatcatacaagga 60
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 1 atacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaagga 60
Query: 61 caatttctttttgagtat 78
||||||||||||||||||
Sbjct: 61 caatttctttttgagtat 78
>28787_hsa-mir-539:mirbase
Length = 78
Score = 139 bits (70), Expect = 3e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 1 atacttgaggagaaattatccttgctgtgttcgctttatttgtgatgaatcatacaagga 60
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 1 atacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaagga 60
Query: 61 caatttctttttgagtat 78
||||||||||||||||||
Sbjct: 61 caatttctttttgagtat 78
>31126_ppy-mir-539:mirbase
Length = 78
Score = 139 bits (70), Expect = 3e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 1 atacttgaggagaaattatccttgctgtgttcgctttatttgtgatgaatcatacaagga 60
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 1 atacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaagga 60
Query: 61 caatttctttttgagtat 78
||||||||||||||||||
Sbjct: 61 caatttctttttgagtat 78
>30466_ptr-mir-539:mirbase
Length = 77
Score = 137 bits (69), Expect = 1e-33
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 2 tacttgaggagaaattatccttgctgtgttcgctttatttgtgatgaatcatacaaggac 61
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 1 tacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaaggac 60
Query: 62 aatttctttttgagtat 78
|||||||||||||||||
Sbjct: 61 aatttctttttgagtat 77
>33411_bta-mir-539:mirbase
Length = 78
Score = 131 bits (66), Expect = 8e-32
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 1 atacttgaggagaaattatccttgctgtgttcgctttatttgtgatgaatcatacaagga 60
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 1 atacttgaggagaaattatccttggtgtgttcgctttatttgggatgaatcatacaagga 60
Query: 61 caatttctttttgagtat 78
|||||||||| |||||||
Sbjct: 61 caatttctttctgagtat 78
>33864_oar-mir-539:mirbase
Length = 110
Score = 131 bits (66), Expect = 8e-32
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 1 atacttgaggagaaattatccttgctgtgttcgctttatttgtgatgaatcatacaagga 60
|||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct: 15 atacttgaggagaaattatccttggtgtgttcactttatttgggatgaatcatacaagga 74
Query: 61 caatttctttttgagtat 78
||||||||||||||||||
Sbjct: 75 caatttctttttgagtat 92
>33865_oar-mir-539:mirbase
Length = 110
Score = 131 bits (66), Expect = 8e-32
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 1 atacttgaggagaaattatccttgctgtgttcgctttatttgtgatgaatcatacaagga 60
|||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct: 15 atacttgaggagaaattatccttggtgtgttcactttatttgggatgaatcatacaagga 74
Query: 61 caatttctttttgagtat 78
||||||||||||||||||
Sbjct: 75 caatttctttttgagtat 92
>26875_cfa-mir-539:mirbase
Length = 76
Score = 119 bits (60), Expect = 3e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 2 tacttgaggagaaattatccttgctgtgttcgctttatttgtgatgaatcatacaaggac 61
||||||||||||||||||||||| |||||||||| | ||||||| |||||||||||||||
Sbjct: 1 tacttgaggagaaattatccttggtgtgttcgctgtgtttgtgaggaatcatacaaggac 60
Query: 62 aatttctttttgagta 77
||||||||||||||||
Sbjct: 61 aatttctttttgagta 76
>32201_mmu-mir-539:mirbase
Length = 74
Score = 87.7 bits (44), Expect = 1e-18
Identities = 70/76 (92%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 2 tacttgaggagaaattatccttgctgtgttcgctttatttgtgatgaatcatacaaggac 61
||||||||||||||||||||||| |||||| ||| | |||| |||||||||||||||||
Sbjct: 1 tacttgaggagaaattatccttggtgtgttggctct-tttg-gatgaatcatacaaggat 58
Query: 62 aatttctttttgagta 77
||||||||||||||||
Sbjct: 59 aatttctttttgagta 74
>32202_mmu-mir-539:mirbase
Length = 74
Score = 87.7 bits (44), Expect = 1e-18
Identities = 70/76 (92%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 2 tacttgaggagaaattatccttgctgtgttcgctttatttgtgatgaatcatacaaggac 61
||||||||||||||||||||||| |||||| ||| | |||| |||||||||||||||||
Sbjct: 1 tacttgaggagaaattatccttggtgtgttggctct-tttg-gatgaatcatacaaggat 58
Query: 62 aatttctttttgagta 77
||||||||||||||||
Sbjct: 59 aatttctttttgagta 74
>32949_rno-mir-539:mirbase
Length = 76
Score = 75.8 bits (38), Expect = 4e-15
Identities = 70/78 (89%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 1 atacttgaggagaaattatccttgctgtgttcgctttatttgtgatgaatcatacaagga 60
|||||||||||||||||||||||| |||||| ||| | |||| ||||||||||||||||
Sbjct: 1 atacttgaggagaaattatccttggtgtgtttgctct-tttg-gatgaatcatacaaggg 58
Query: 61 caatttctttttgagtat 78
|||||||||| ||||||
Sbjct: 59 taatttcttttcgagtat 76
>33070_rno-mir-3576:mirbase
Length = 115
Score = 75.8 bits (38), Expect = 4e-15
Identities = 70/78 (89%), Gaps = 2/78 (2%)
Strand = Plus / Minus
Query: 1 atacttgaggagaaattatccttgctgtgttcgctttatttgtgatgaatcatacaagga 60
|||||||||||||||||||||||| |||||| ||| | |||| ||||||||||||||||
Sbjct: 95 atacttgaggagaaattatccttggtgtgtttgctct-tttg-gatgaatcatacaaggg 38
Query: 61 caatttctttttgagtat 78
|||||||||| ||||||
Sbjct: 37 taatttcttttcgagtat 20
>26856_cfa-mir-487a:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 1e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 16 ttatccttgctgtgttcgctttatttgtgatgaatcatacaaggaca 62
|||||| ||||||||||||| ||||| ||| |||||||||| |||||
Sbjct: 17 ttatccctgctgtgttcgctgtatttatgacgaatcatacagggaca 63
>27192_eca-mir-487a:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 1e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 16 ttatccttgctgtgttcgctttatttgtgatgaatcatacaaggaca 62
|||||| ||||||||||||| ||||| ||| |||||||||| |||||
Sbjct: 17 ttatccctgctgtgttcgctgtatttatgacgaatcatacagggaca 63
>28675_hsa-mir-487a:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 1e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 16 ttatccttgctgtgttcgctttatttgtgatgaatcatacaaggaca 62
|||||| |||||||||||||| |||| ||| |||||||||| |||||
Sbjct: 17 ttatccctgctgtgttcgcttaatttatgacgaatcatacagggaca 63
>31023_ppy-mir-487a:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 1e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 16 ttatccttgctgtgttcgctttatttgtgatgaatcatacaaggaca 62
|||||| |||||||||||||| |||| ||| |||||||||| |||||
Sbjct: 17 ttatccctgctgtgttcgcttaatttatgacgaatcatacagggaca 63
>33392_bta-mir-487a:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 1e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 16 ttatccttgctgtgttcgctttatttgtgatgaatcatacaaggaca 62
|||||| ||||||||||||| ||||| ||| |||||||||| |||||
Sbjct: 17 ttatccctgctgtgttcgctgtatttatgacgaatcatacagggaca 63
>33852_oar-mir-487a:mirbase
Length = 103
Score = 52.0 bits (26), Expect = 6e-08
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 17 tatccttgctgtgttcgctttatttgtgatgaatcatacaaggaca 62
||||| ||||||||||||| ||||| ||| |||||||||| |||||
Sbjct: 28 tatccctgctgtgttcgctgtatttatgacgaatcatacagggaca 73
>33853_oar-mir-487a:mirbase
Length = 103
Score = 52.0 bits (26), Expect = 6e-08
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 17 tatccttgctgtgttcgctttatttgtgatgaatcatacaaggaca 62
||||| ||||||||||||| ||||| ||| |||||||||| |||||
Sbjct: 28 tatccctgctgtgttcgctgtatttatgacgaatcatacagggaca 73
>27924_mml-mir-487a:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 18 atccttgctgtgttcgctttatttgtgatgaatcatacaaggaca 62
|||| ||||||||||||||| ||| ||| |||||||||| |||||
Sbjct: 19 atccctgctgtgttcgctttgtttatgacgaatcatacagggaca 63
>27765_mml-mir-154:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 30 ttcgctttatttgtgatgaatcataca 56
|||||||||||||||| ||||||||||
Sbjct: 33 ttcgctttatttgtgacgaatcataca 59
>28220_mne-mir-154:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 30 ttcgctttatttgtgatgaatcataca 56
|||||||||||||||| ||||||||||
Sbjct: 33 ttcgctttatttgtgacgaatcataca 59
>28312_ggo-mir-154:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 30 ttcgctttatttgtgatgaatcataca 56
|||||||||||||||| ||||||||||
Sbjct: 33 ttcgctttatttgtgacgaatcataca 59
>28481_hsa-mir-154:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 30 ttcgctttatttgtgatgaatcataca 56
|||||||||||||||| ||||||||||
Sbjct: 33 ttcgctttatttgtgacgaatcataca 59
>30101_ppa-mir-154:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 30 ttcgctttatttgtgatgaatcataca 56
|||||||||||||||| ||||||||||
Sbjct: 33 ttcgctttatttgtgacgaatcataca 59
>30249_ptr-mir-154:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 30 ttcgctttatttgtgatgaatcataca 56
|||||||||||||||| ||||||||||
Sbjct: 33 ttcgctttatttgtgacgaatcataca 59
>30390_ptr-mir-487a:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 16 ttatccttgctgtgttcgctttatttgtgatgaatcatacaaggaca 62
|||||| ||||||||||||| |||| ||| |||||||||| |||||
Sbjct: 16 ttatccctgctgtgttcgctgaatttatgacgaatcatacagggaca 62
>30863_ppy-mir-154:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 30 ttcgctttatttgtgatgaatcataca 56
|||||||||||||||| ||||||||||
Sbjct: 33 ttcgctttatttgtgacgaatcataca 59
>31890_mmu-mir-154:mirbase
Length = 66
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 30 ttcgctttatttgtgatgaatcataca 56
||||||||||| |||| ||||||||||
Sbjct: 24 ttcgctttattcgtgacgaatcataca 50
>32761_rno-mir-154:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 30 ttcgctttatttgtgatgaatcataca 56
||||||||||| |||| ||||||||||
Sbjct: 33 ttcgctttattcgtgacgaatcataca 59
