miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAGW01206554.1/1585-1664 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 139 bits (70), Expect = 6e-33
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 1 atacttgaggagaaattatccttgctgtgttcgctttatttgtgatgaatcatacaagga 60
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 2 atacttgaggagaaattatccttggtgtgttcgctttattcgtgatgaatcatacaagga 61
Query: 61 caatttctttttgagtat 78
||||||||||||||||||
Sbjct: 62 caatttctttttgagtat 79
>RF00641;mir-154;AABR04040370.1/14458-14381 10116:Rattus
norvegicus (Norway rat)
Length = 78
Score = 75.8 bits (38), Expect = 7e-14
Identities = 70/78 (89%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 1 atacttgaggagaaattatccttgctgtgttcgctttatttgtgatgaatcatacaagga 60
|||||||||||||||||||||||| |||||| ||| | |||| ||||||||||||||||
Sbjct: 2 atacttgaggagaaattatccttggtgtgtttgctct-tttg-gatgaatcatacaaggg 59
Query: 61 caatttctttttgagtat 78
|||||||||| ||||||
Sbjct: 60 taatttcttttcgagtat 77
>RF00641;mir-154;ABRQ01054375.1/598-677 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 61.9 bits (31), Expect = 1e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 16 ttatccttgctgtgttcgctttatttgtgatgaatcatacaaggaca 62
|||||| ||||||||||||||||||| ||| |||||||||| |||||
Sbjct: 17 ttatccctgctgtgttcgctttatttatgacgaatcatacagggaca 63
>RF00641;mir-154;AAQR01332678.1/6090-6172 30611:Otolemur garnettii
(small-eared galago)
Length = 83
Score = 60.0 bits (30), Expect = 4e-09
Identities = 44/48 (91%), Gaps = 3/48 (6%)
Strand = Plus / Plus
Query: 34 ctttatttgtgatgaatca---tacaaggacaatttctttttgagtat 78
||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 35 ctttatttgtgatgaatcatcatacaaggacaatttcttttagagtat 82
>RF00641;mir-154;AAIY01699599.1/4687-4765 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 58.0 bits (29), Expect = 2e-08
Identities = 66/77 (85%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 2 tacttgaggagaaattatccttgctgtgttcgctttatttgtgatgaatcatacaaggac 61
||||||||||||||||| ||||| |||||| |||||| | || |||||| |||||||
Sbjct: 3 tacttgaggagaaattacccttggtgtgttggcttta-tcacgacaaatcatccaaggac 61
Query: 62 aatttctttttgagtat 78
|||||||| ||||||||
Sbjct: 62 aatttcttgttgagtat 78
>RF00641;mir-154;ABDC01257673.1/14547-14626 30608:Microcebus
murinus (gray mouse lemur)
Length = 80
Score = 56.0 bits (28), Expect = 7e-08
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 7 gaggagaaattatccttgctgtgttcgctttatttgtgatgaatcatacaaggacaattt 66
|||||| ||||| ||||||||||||| |||||||||||| || || |||||||| ||
Sbjct: 8 gaggagcaattacccttgctgtgttcactttatttgtgactaaccacacaaggacggttc 67
Query: 67 ctttttgagtat 78
||||||| ||||
Sbjct: 68 ctttttgggtat 79
>RF00641;mir-154;ABRQ01054375.1/318-394 9813:Procavia capensis
(cape rock hyrax)
Length = 77
Score = 46.1 bits (23), Expect = 6e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 3 acttgaggagaaattatccttgctgtgttcgcttt 37
|||||||||||| || ||||||||||||| |||||
Sbjct: 4 acttgaggagaagttctccttgctgtgtttgcttt 38
>RF00641;mir-154;ABRQ01054377.1/1437-1516 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 30 ttcgctttatttgtgatgaatcataca 56
|||||||||||||||| ||||||||||
Sbjct: 31 ttcgctttatttgtgacgaatcataca 57
