miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00777;mir-541;ABRQ01054378.1/2639-2728 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 123 bits (62), Expect = 4e-28
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 3 gtcagggaaaggattctgctgtcggtcccactccagagttcgcaaaatgggtggtgggca 62
|||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 7 gtcaggaaaaggattctgctgtcggtcccactccaaagttctcaaaatgggtggtgggca 66
Query: 63 cagaatccagtctctgcttgtg 84
|||||||| | |||||||||||
Sbjct: 67 cagaatccggactctgcttgtg 88
>RF00777;mir-541;AAEX02019639.1/168837-168928 9615:Canis lupus
familiaris (dog)
Length = 92
Score = 111 bits (56), Expect = 1e-24
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 5 cagggaaaggattctgctgtcggtcccactccagagttcgcaaaatgggtggtgggcaca 64
|||||| ||||||||||||| |||||||| ||| |||||||||||| |||||||||||||
Sbjct: 11 cagggagaggattctgctgtgggtcccaccccaaagttcgcaaaataggtggtgggcaca 70
Query: 65 gaatccagtctctgcttgtg 84
|||||||| |||||||||||
Sbjct: 71 gaatccagactctgcttgtg 90
>RF00777;mir-541;AANN01107744.1/773-685 9365:Erinaceus europaeus
(western European hedgehog)
Length = 89
Score = 85.7 bits (43), Expect = 8e-17
Identities = 71/79 (89%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 3 gtcagggaaaggattctgctgtcggtcccactccagagttcgcaaaatgggtggtgggca 62
||||||||||||||||||||||||||||||||||| |||| | | ||||||||||||
Sbjct: 7 gtcagggaaaggattctgctgtcggtcccactccacgactcgc-agacgggtggtgggca 65
Query: 63 cagaatccagtctctgctt 81
|||||||||| ||||||||
Sbjct: 66 cagaatccagactctgctt 84
>RF00777;mir-541;ABRP01151524.1/20247-20336 132908:Pteropus
vampyrus (large flying fox)
Length = 90
Score = 79.8 bits (40), Expect = 5e-15
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 1 acgtcagggaaaggattctgctgtcggtcccactccagagttcgcaaaatgggtggtggg 60
||||||||||| || |||||| |||||||||||| || |||||||| | |||| ||||||
Sbjct: 5 acgtcagggaaggggttctgccgtcggtcccactgcaaagttcgcagagtgggaggtggg 64
Query: 61 cacagaatccagtctctgcttgtg 84
| |||||||| | |||||||||||
Sbjct: 65 cgcagaatcccgactctgcttgtg 88
>RF00777;mir-541;ABRT010163758.1/2093-2182 9478:Tarsius syrichta
(Philippine tarsier)
Length = 90
Score = 69.9 bits (35), Expect = 5e-12
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 1 acgtcagggaaaggattctgctgtcggtcccactccagagttcgcaaaatgggtggtggg 60
||||||| |||||||||||||||| |||||||||||| ||| ||||||||||||||
Sbjct: 5 acgtcagagaaaggattctgctgttggtcccactccaagcttcacaaaatgggtggtgaa 64
Query: 61 cacagaatccagtctctgcttgt 83
|| || ||||| ||||||||||
Sbjct: 65 cagaggctccagactctgcttgt 87
