miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAYZ01424897.1/234-313 9978:Ochotona princeps
(American pika)
Length = 80
Score = 69.9 bits (35), Expect = 4e-12
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 1 cttaaggagaagttgcccgtgnnnnnnncgctttatttgtgacgaaacattcgcggtgca 60
|||||||||||| |||||||| |||| |||||| ||||||||||||||||||||
Sbjct: 5 cttaaggagaagctgcccgtgtctttttcgctgtatttgggacgaaacattcgcggtgca 64
Query: 61 cttctttttcag 72
|||||| |||||
Sbjct: 65 cttcttcttcag 76
>RF00641;mir-154;ABRQ01054369.1/755-834 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 69.9 bits (35), Expect = 4e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 38 tgtgacgaaacattcgcggtgcacttctttttcag 72
|||||||||||||||||||||||||||||||||||
Sbjct: 42 tgtgacgaaacattcgcggtgcacttctttttcag 76
>RF00641;mir-154;AAIY01434920.1/105-183 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 29 cgctttatttgtgacgaaacattcgcggtgcacttctttttc 70
|||||||| |||||||||||| | ||||||||||||||||
Sbjct: 32 cgctttatatgtgacgaaacaaacatggtgcacttctttttc 73
