miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00892;mir-551;ABRQ01321591.1/2376-2461 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 107 bits (54), Expect = 1e-23
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 1 atgaaatcaagcgtgggtgagacctggtgcagaacgggaaggcgacccatacttggtttc 60
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 13 atgaaatcaagcgtgggtgagacctggtgcaaaacaggaaggcgacccatacttggtttc 72
Query: 61 ag 62
||
Sbjct: 73 ag 74
>RF00892;mir-551;AAQR01614836.1/887-972 30611:Otolemur garnettii
(small-eared galago)
Length = 86
Score = 105 bits (53), Expect = 6e-23
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 2 tgaaatcaagcgtgggtgagacctggtgcagaacgggaaggcgacccatacttggtttca 61
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 14 tgaaatcaagcgtgggtgagacctggtgcagaacaggaaggcgacccacacttggtttca 73
Query: 62 g 62
|
Sbjct: 74 g 74
>RF00892;mir-551;AAKN02050963.1/24909-24994 10141:Cavia porcellus
(domestic guinea pig)
Length = 86
Score = 103 bits (52), Expect = 2e-22
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 3 gaaatcaagcgtgggtgagacctggtgcagaacgggaaggcgacccatacttggtttcag 62
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 15 gaaatcaagcgtgggtgagacctggtgcggaaggggaaggcgacccatacttggtttcag 74
>RF00892;mir-551;AANN01687869.1/1924-1838 9365:Erinaceus europaeus
(western European hedgehog)
Length = 87
Score = 77.8 bits (39), Expect = 1e-14
Identities = 58/63 (92%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 atgaaatcaagcgtgggtgagacctggtgcagaac-gggaaggcgacccatacttggttt 59
|||||||||||| ||||||||||||||| |||||| | |||||||||||||||||||||
Sbjct: 13 atgaaatcaagcctgggtgagacctggtacagaacaagaaaggcgacccatacttggttt 72
Query: 60 cag 62
|||
Sbjct: 73 cag 75
>RF00892;mir-551;AAWZ01032406.1/96128-96215 28377:Anolis
carolinensis (green anole)
Length = 88
Score = 58.0 bits (29), Expect = 1e-08
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 3 gaaatcaagcgtgggtgagacctggtgcaga-acgggaaggcgacccatacttggtttca 61
||||||||| |||||||||||| ||| | | || |||||||||||||||||||||||||
Sbjct: 16 gaaatcaaggttgggtgagacctcgtgaacagactggaaggcgacccatacttggtttca 75
Query: 62 g 62
|
Sbjct: 76 g 76
>RF00892;mir-551;AADN02021036.1/52994-52908 9031:Gallus gallus
(chicken)
Length = 87
Score = 50.1 bits (25), Expect = 3e-06
Identities = 53/61 (86%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 3 gaaatcaagcgtgggtgagacctggt-gcagaacgggaaggcgacccatacttggtttca 61
||||||||| |||||| |||||| || | | ||| || ||||||||||||||||||||||
Sbjct: 15 gaaatcaagggtgggtaagaccttgtaggataactggcaggcgacccatacttggtttca 74
Query: 62 g 62
|
Sbjct: 75 g 75
>RF00892;mir-551;AAFR03046841.1/43899-43813 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 87
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 aaggcgacccatacttggtttcag 62
||||||||||||||||||||||||
Sbjct: 52 aaggcgacccatacttggtttcag 75
>RF00892;mir-551;ABQF01023095.1/42853-42939 59729:Taeniopygia
guttata
Length = 87
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 aaggcgacccatacttggtttcag 62
||||||||||||||||||||||||
Sbjct: 52 aaggcgacccatacttggtttcag 75
>RF00892;mir-551;AAVX01059360.1/184-266 7868:Callorhinchus milii
(ghost shark)
Length = 83
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 37 ggaaggcgacccatacttggtttc 60
||||||||||||||||||||||||
Sbjct: 49 ggaaggcgacccatacttggtttc 72
