miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00928;mir-590;AAQQ01313324.1/3303-3207 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 97
Score = 109 bits (55), Expect = 5e-24
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 4 tcagaaacgagcttattcataaaagtacagtataatccagtaaacctgtaattttatgta 63
||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 8 tcagaaatgagcttattcataaaagtacagtatcatccagtaagtctgtaattttatgta 67
Query: 64 taagctagtctctga 78
|||||| ||||||||
Sbjct: 68 taagctggtctctga 82
>RF00928;mir-590;AAPN01308740.1/1340-1245 9258:Ornithorhynchus
anatinus (platypus)
Length = 96
Score = 97.6 bits (49), Expect = 2e-20
Identities = 74/81 (91%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 caatcagaaacgagcttattcataaaagtacagtataatccagtaaacctgtaattttat 60
|||||||||| |||||||| |||||||||||||||| || |||||||||||| ||||||
Sbjct: 5 caatcagaaatgagcttatccataaaagtacagtatcgtc-agtaaacctgtacttttat 63
Query: 61 gtataagctagtctctgattg 81
| |||||||||||||||||||
Sbjct: 64 ggataagctagtctctgattg 84
>RF00928;mir-590;AAGV020627533.1/2369-2273 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 97
Score = 97.6 bits (49), Expect = 2e-20
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 1 caatcagaaacgagcttattcataaaagtacagtataatccagtaaacctgtaattttat 60
||||| |||| |||| ||||||||||| ||||||||||||||| | |||||||||||||
Sbjct: 5 caatccgaaatgagcgtattcataaaattacagtataatccagctagcctgtaattttat 64
Query: 61 gtataagctagtctctgattg 81
|||||| ||||||||||||||
Sbjct: 65 gtataaactagtctctgattg 85
>RF00928;mir-590;AAPY01718744.1/4971-4879 37347:Tupaia belangeri
(northern tree shrew)
Length = 93
Score = 73.8 bits (37), Expect = 3e-13
Identities = 62/70 (88%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 12 gagcttattcataaaagtacagtataatccagtaaacctgtaattttatgtataagctag 71
|||||||||||||||||||||||||||| | ||| |||| ||||||||||||||||
Sbjct: 16 gagcttattcataaaagtacagtataatac----aacaagtaactttatgtataagctag 71
Query: 72 tctctgattg 81
||||||||||
Sbjct: 72 tctctgattg 81
>RF00928;mir-590;AANU01190949.1/13092-13188 9544:Macaca mulatta
(rhesus monkey)
Length = 97
Score = 65.9 bits (33), Expect = 7e-11
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 4 tcagaaacgagcttattcataaaagtacagtataatccagtaaacctgtaattttatgta 63
||||||| |||||||||||||||||| |||||| | ||| | |||||||||||||||
Sbjct: 8 tcagaaatgagcttattcataaaagtgcagtatggtggagtcagtctgtaattttatgta 67
Query: 64 taagctagtctct 76
|||||| ||||||
Sbjct: 68 taagctggtctct 80
>RF00928;mir-590;AAGU02451779.1/3421-3513 9785:Loxodonta africana
(African savanna elephant)
Length = 93
Score = 63.9 bits (32), Expect = 3e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 22 ataaaagtacagtataatccagtaaacctgtaattttatgtataagctagtctctgattg 81
||||||||| |||||||||| |||||||| ||||||||||||| ||||||||| ||||
Sbjct: 22 ataaaagtatagtataatcctacaaacctgtgattttatgtataaactagtctctcattg 81
>RF00928;mir-590;AAGW01523546.1/6054-5958 9986:Oryctolagus
cuniculus (rabbit)
Length = 97
Score = 58.0 bits (29), Expect = 2e-08
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 7 gaaacgagcttattcataaaagtacagtataatccagtaaacctgtaattttatgtataa 66
|||| |||||||||||||||||| ||||| | || || | ||||| ||||||||||||
Sbjct: 11 gaaatgagcttattcataaaagtgcagtacgagccggtgagcctgtcgttttatgtataa 70
Query: 67 gctagtctctgat 79
||| |||||||||
Sbjct: 71 gctcgtctctgat 83
