miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00877;mir-592;ABRQ01197780.1/1278-1365 9813:Procavia capensis
(cape rock hyrax)
Length = 88
Score = 127 bits (64), Expect = 2e-29
Identities = 80/84 (95%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 ttatgccatgacattgtgtcaatatgcgatgatgtgt-gtgatggcacagcgtcatcacg 59
|||||| ||||| |||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 3 ttatgctatgacgttgtgtcaatatgcgatgatgtgttgtgatggcgcagcgtcatcacg 62
Query: 60 tggtgacgcaacatcatgacgtaa 83
||||||||||||||||||||||||
Sbjct: 63 tggtgacgcaacatcatgacgtaa 86
>RF00877;mir-592;AAQQ01768898.1/161-74 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 88
Score = 97.6 bits (49), Expect = 2e-20
Identities = 74/81 (91%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 ttatgccatgacattgtgtcaatatgcgatga-tgtgtgtgatggcacagcgtcatcacg 59
||||||||||||||||||||| ||||||||| || || ||||||||||||||||||||
Sbjct: 3 ttatgccatgacattgtgtcagaatgcgatgactggttgcgatggcacagcgtcatcacg 62
Query: 60 tggtgacgcaacatcatgacg 80
||| |||||||||||||||||
Sbjct: 63 tggagacgcaacatcatgacg 83
>RF00877;mir-592;AAPN01131115.1/15145-15229 9258:Ornithorhynchus
anatinus (platypus)
Length = 85
Score = 46.1 bits (23), Expect = 7e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 37 tgtgatggcacagcgtcatcacgtggtgacgcaacatcatgac 79
|||||||||||||| ||||||| | || | |||||||||||||
Sbjct: 37 tgtgatggcacagcctcatcacatagtaatgcaacatcatgac 79
