miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01059;mir-598;AADA01227318.1/1437-1341 9598:Pan troglodytes
(chimpanzee)
Length = 97
Score = 113 bits (57), Expect = 3e-25
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 1 tgatgctggcagtgatgccgatggtgcgggctggaaatggggtgctacgtcatcgttgtc 60
|||||||||| ||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 16 tgatgctggcggtgatcccgatggtgtgagctggaaatggggtgctacgtcatcgttgtc 75
Query: 61 atcgtcatcatca 73
|||||||||||||
Sbjct: 76 atcgtcatcatca 88
>RF01059;mir-598;AC118607.12/167329-167233 10090:Mus musculus
(house mouse)
Length = 97
Score = 97.6 bits (49), Expect = 2e-20
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 1 tgatgctggcagtgatgccgatggtgcgggctggaaatggggtgctacgtcatcgttgtc 60
|||||||||| ||||||||||||||||| |||| ||||||| |||||||||||||| |||
Sbjct: 16 tgatgctggcggtgatgccgatggtgcgagctgaaaatgggctgctacgtcatcgtcgtc 75
Query: 61 atcgtcatcatca 73
||||| |||||||
Sbjct: 76 atcgttatcatca 88
>RF01059;mir-598;AAGU02638220.1/6389-6484 9785:Loxodonta africana
(African savanna elephant)
Length = 96
Score = 97.6 bits (49), Expect = 2e-20
Identities = 68/73 (93%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 tgatgctggcagtgatgccgatggtgcgggctggaaatggggtgctacgtcatcgttgtc 60
|||||||||| ||||||||||||||| | ||||||||| || ||||||||||||||||||
Sbjct: 16 tgatgctggcggtgatgccgatggtgggagctggaaatagg-tgctacgtcatcgttgtc 74
Query: 61 atcgtcatcatca 73
|||||||||||||
Sbjct: 75 atcgtcatcatca 87
>RF01059;mir-598;ABDC01461977.1/439-343 30608:Microcebus murinus
(gray mouse lemur)
Length = 97
Score = 73.8 bits (37), Expect = 3e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 1 tgatgctggcagtgatgccgatggtgcgggctggaaatggggtgctacgtcatcgttgtc 60
|||||||||| |||| ||||||| | | |||||| | |||||||||||||||||||||
Sbjct: 16 tgatgctggcggtgacaccgatggcgtgagctggagacagggtgctacgtcatcgttgtc 75
Query: 61 atcgtcatcatca 73
|||||||||||||
Sbjct: 76 atcgtcatcatca 88
>RF01059;mir-598;AAFC03106541.1/8060-7964 9913:Bos taurus (cattle)
Length = 97
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 1 tgatgctggcagtgatgccgatggtgcgggctggaaatggggtgctacgtcatcgttgtc 60
||||||||| ||||||||||||||||| |||||| |||||||||| |||| |||||
Sbjct: 16 tgatgctggtggtgatgccgatggtgcgagctggacggtgggtgctacggcatcattgtc 75
Query: 61 atcgtcatc 69
||||||||
Sbjct: 76 gtcgtcatc 84
>RF01059;mir-598;AAHX01053836.1/31844-31935 10116:Rattus
norvegicus (Norway rat)
Length = 92
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 48 cgtcatcgttgtcatcgtcatcatca 73
||||||||||||||||||||||||||
Sbjct: 49 cgtcatcgttgtcatcgtcatcatca 24
>RF01059;mir-598;ABRP01290772.1/2586-2683 132908:Pteropus vampyrus
(large flying fox)
Length = 98
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 33 ggaaatggggtgctacgtcatcgttgtcatcgtc 66
|||||||||| ||||||||| ||||||||||||
Sbjct: 48 ggaaatggggagctacgtcactgttgtcatcgtc 81
