miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01010;mir-632;AAGW01337624.1/6490-6583 9986:Oryctolagus
cuniculus (rabbit)
Length = 94
Score = 93.7 bits (47), Expect = 2e-19
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 7 gacgggaggcggagcagcgaacgagggcgtcggccattttgtgcctgtttcctgtggga 65
||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 21 gacgggaggcggagccgcgaacgagggtgtcggccattttgtgtctgtttcctgtggga 79
>RF01010;mir-632;ABRN01144145.1/262-169 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 94
Score = 89.7 bits (45), Expect = 4e-18
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 5 ctgacgggaggcggagcagcgaacgagggcgtcggccattttgtgcctgtttcctgtggg 64
|||||||||||| ||||||||| |||||||||||||||||||||| |||| |||||||||
Sbjct: 19 ctgacgggaggcagagcagcgagcgagggcgtcggccattttgtggctgtatcctgtggg 78
Query: 65 a 65
|
Sbjct: 79 a 79
>RF01010;mir-632;ABRT010518505.1/461-367 9478:Tarsius syrichta
(Philippine tarsier)
Length = 95
Score = 89.7 bits (45), Expect = 4e-18
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 5 ctgacgggaggcggagcagcgaacgagggcgtcggccattttgtgcctgtttcctgtggg 64
||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 19 ctgacgggaggcggagcggcgaacgaggccgtcggccattttgtatctgtttcctgtggg 78
Query: 65 a 65
|
Sbjct: 79 a 79
>RF01010;mir-632;CABD01178489.1/2798-2705 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 94
Score = 79.8 bits (40), Expect = 4e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 6 tgacgggaggcggagcagcgaacgagggcgtcggccattttgtgcctgtttcctgtggga 65
|||||||||||||||| | |||||||| |||||||||||||||| ||| |||||||||||
Sbjct: 20 tgacgggaggcggagcggggaacgaggccgtcggccattttgtgtctgcttcctgtggga 79
>RF01010;mir-632;AAKN02033149.1/3386-3291 10141:Cavia porcellus
(domestic guinea pig)
Length = 96
Score = 73.8 bits (37), Expect = 2e-13
Identities = 53/57 (92%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 9 cgggaggcggagcagcgaacgagggcgtcggccattttgtgcctgtttcctgtggga 65
||||||||||||| || |||||||||||||||||||||||| ||| |||||||||||
Sbjct: 23 cgggaggcggagc-gcaaacgagggcgtcggccattttgtgtctgcttcctgtggga 78
>RF01010;mir-632;AANN01619229.1/133-226 9365:Erinaceus europaeus
(western European hedgehog)
Length = 94
Score = 67.9 bits (34), Expect = 1e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 24 cgaacgagggcgtcggccattttgtgcctgtttcctgtggga 65
|||||| | |||||||||||||||||||||||||||||||||
Sbjct: 38 cgaacgggagcgtcggccattttgtgcctgtttcctgtggga 79
>RF01010;mir-632;AAYZ01474155.1/733-640 9978:Ochotona princeps
(American pika)
Length = 94
Score = 67.9 bits (34), Expect = 1e-11
Identities = 56/62 (90%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 5 ctgacgggaggcg-gagcagcgaacgagggcgtcggccattttgtgcctgtttcctgtgg 63
||||||||| ||| |||| ||||||||||| ||||||||||||||| |||||||||| ||
Sbjct: 18 ctgacgggaagcgcgagccgcgaacgagggtgtcggccattttgtgtctgtttcctgagg 77
Query: 64 ga 65
||
Sbjct: 78 ga 79
>RF01010;mir-632;AAGU02628656.1/415-322 9785:Loxodonta africana
(African savanna elephant)
Length = 94
Score = 65.9 bits (33), Expect = 5e-11
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 17 ggagcagcgaacgagggcgtcggccattttgtgcctgtttcctgtggga 65
||||| || ||||||| |||||||||||||||| |||||||||||||||
Sbjct: 31 ggagcggctaacgaggccgtcggccattttgtgtctgtttcctgtggga 79
>RF01010;mir-632;ABVD01081068.1/369-276 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 94
Score = 60.0 bits (30), Expect = 3e-09
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 9 cgggaggcggagcagcgaacgagggcgtcggccattttgtgcctgtttcctgtg 62
||||||| |||||| ||||| ||| ||||||||||||||| ||||||||||||
Sbjct: 23 cgggaggtggagcaacgaaccaggctgtcggccattttgtgtctgtttcctgtg 76
>RF01010;mir-632;ABRQ01763187.1/1091-999 9813:Procavia capensis
(cape rock hyrax)
Length = 93
Score = 60.0 bits (30), Expect = 3e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 28 cgagggcgtcggccattttgtgcctgtttcctgtggga 65
||||| ||||||||||||||||||||||||||| ||||
Sbjct: 41 cgaggccgtcggccattttgtgcctgtttcctgcggga 78
>RF01010;mir-632;AAGV020133793.1/2039-1946 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 94
Score = 58.0 bits (29), Expect = 1e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 5 ctgacgggaggcggagcagcgaacgagggcgtcggccattttgtgcctgtttcctgtggg 64
|||||||||||||||| ||||| ||| ||| ||||||||||| ||||||||||||||
Sbjct: 19 ctgacgggaggcggagaggcgaaagagactgtccgccattttgtgtctgtttcctgtggg 78
Query: 65 a 65
|
Sbjct: 79 a 79
>RF01010;mir-632;AL591146.21/50773-50865 10090:Mus musculus (house
mouse)
Length = 93
Score = 58.0 bits (29), Expect = 1e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 25 gaacgagggcgtcggccattttgtgcctgtttcctgtggga 65
||||||||| ||||||||||||||| |||||||||| ||||
Sbjct: 38 gaacgagggtgtcggccattttgtgtctgtttcctgcggga 78
>RF01010;mir-632;AALT01115250.1/29-124 42254:Sorex araneus
(European shrew)
Length = 96
Score = 54.0 bits (27), Expect = 2e-07
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 2 tggctgacgggaggcggagcagcgaacgagggcgtcggccattttgtgcctgtttcctgt 61
|||| |||||||||| |||| ||| |||||| |||||| ||||||| |||||||||||
Sbjct: 17 tggccgacgggaggcagagcgccgagcgagggtgtcggcttttttgtgtctgtttcctgt 76
Query: 62 ggg 64
|||
Sbjct: 77 ggg 79
>RF01010;mir-632;AAFC03041127.1/32665-32729 9913:Bos taurus
(cattle)
Length = 65
Score = 48.1 bits (24), Expect = 1e-05
Identities = 54/63 (85%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 3 ggctgacgggaggcggagcagcgaacgagggcgtcggccattttgtgcctgtttcctgtg 62
|||||||||||| | |||||| | ||| ||||| |||||||||||| |||||||||||
Sbjct: 4 ggctgacgggagac--agcagcaagcgaaggcgttggccattttgtggatgtttcctgtg 61
Query: 63 gga 65
|||
Sbjct: 62 gga 64
