miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00937;mir-653;AAWR02013812.1/75511-75414 9796:Equus caballus
(horse)
Length = 98
Score = 168 bits (85), Expect = 7e-42
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 tcattccttcagtgttgaaacaatctctgctgaaccaggctccaaactacgttcactgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tcattccttcagtgttgaaacaatctctgctgaaccaggctccaaactacgttcactgga 61
Query: 61 gtttgtttcaatattgcaagaatga 85
|||||||||||||||||||||||||
Sbjct: 62 gtttgtttcaatattgcaagaatga 86
>RF00937;mir-653;AANN01380427.1/400-497 9365:Erinaceus europaeus
(western European hedgehog)
Length = 98
Score = 129 bits (65), Expect = 6e-30
Identities = 80/85 (94%)
Strand = Plus / Plus
Query: 1 tcattccttcagtgttgaaacaatctctgctgaaccaggctccaaactacgttcactgga 60
|||||||||||||||||||||| |||| |||||||||| |||||||| | ||||||||||
Sbjct: 2 tcattccttcagtgttgaaacattctcagctgaaccagactccaaaccaagttcactgga 61
Query: 61 gtttgtttcaatattgcaagaatga 85
|||||||||||||||||||||||||
Sbjct: 62 gtttgtttcaatattgcaagaatga 86
>RF00937;mir-653;AAKN02016831.1/11044-10947 10141:Cavia porcellus
(domestic guinea pig)
Length = 98
Score = 115 bits (58), Expect = 9e-26
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 4 ttccttcagtgttgaaacaatctctgctgaaccaggctccaaactacgttcactggagtt 63
||||||||||||||||||| ||||| ||||||||||||||| || | |||||||||||||
Sbjct: 5 ttccttcagtgttgaaacactctctactgaaccaggctccacaccaagttcactggagtt 64
Query: 64 tgtttcaatattgcaagaatga 85
||||||| ||||||||||||||
Sbjct: 65 tgtttcagtattgcaagaatga 86
>RF00937;mir-653;ABRP01072941.1/3876-3780 132908:Pteropus vampyrus
(large flying fox)
Length = 97
Score = 113 bits (57), Expect = 4e-25
Identities = 79/85 (92%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 tcattccttcagtgttgaaacaatctctgctgaaccaggctccaaactacgttcactgga 60
|||||||||||||| ||||||||||||| ||||||| |||||||||| | ||||||||||
Sbjct: 2 tcattccttcagtgctgaaacaatctctactgaacc-ggctccaaacaaagttcactgga 60
Query: 61 gtttgtttcaatattgcaagaatga 85
| |||||||||||||||||||||||
Sbjct: 61 gattgtttcaatattgcaagaatga 85
>RF00937;mir-653;ABRT010247111.1/6369-6272 9478:Tarsius syrichta
(Philippine tarsier)
Length = 98
Score = 113 bits (57), Expect = 4e-25
Identities = 78/85 (91%)
Strand = Plus / Plus
Query: 1 tcattccttcagtgttgaaacaatctctgctgaaccaggctccaaactacgttcactgga 60
||||||||||||||||||||||| |||| ||||||||| || |||| | ||||||||||
Sbjct: 2 tcattccttcagtgttgaaacaaactctactgaaccagacttcaaatgaagttcactgga 61
Query: 61 gtttgtttcaatattgcaagaatga 85
|||||||||||||||||||||||||
Sbjct: 62 gtttgtttcaatattgcaagaatga 86
>RF00937;mir-653;AALT01658113.1/578-675 42254:Sorex araneus
(European shrew)
Length = 98
Score = 105 bits (53), Expect = 9e-23
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 8 ttcagtgttgaaacaatctctgctgaaccaggctccaaactacgttcactggagtttgtt 67
||||||||||||||||||||||||||||||| || |||| | |||||||||||||||||
Sbjct: 9 ttcagtgttgaaacaatctctgctgaaccagactgcaaatcaagttcactggagtttgtt 68
Query: 68 tcaatattgcaagaatg 84
||||||||| |||||||
Sbjct: 69 tcaatattggaagaatg 85
>RF00937;mir-653;ABRO01064908.1/1765-1668 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 98
Score = 101 bits (51), Expect = 1e-21
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 1 tcattccttcagtgttgaaacaatctctgctgaaccaggctccaaactacgttcactgga 60
|||||||||||||||| || |||||||| ||||||| ||||||||| | ||||| ||||
Sbjct: 2 tcattccttcagtgttaaagcaatctctattgaaccaagctccaaaccaagttcattgga 61
Query: 61 gtttgtttcaatattgcaagaat 83
|||||||||||||||||||||||
Sbjct: 62 gtttgtttcaatattgcaagaat 84
>RF00937;mir-653;AAQR01063642.1/1854-1758 30611:Otolemur garnettii
(small-eared galago)
Length = 97
Score = 99.6 bits (50), Expect = 5e-21
Identities = 72/78 (92%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 1 tcattccttcagtgttgaaacaatctctgctgaaccaggctccaaactacgttcactgga 60
|||||||||||||||||||||||||||| |||||| ||||| |||| || |||||||||
Sbjct: 2 tcattccttcagtgttgaaacaatctctactgaacaaggcttcaaagta-attcactgga 60
Query: 61 gtttgtttcaatattgca 78
||||||||||||||||||
Sbjct: 61 gtttgtttcaatattgca 78
>RF00937;mir-653;ABRR01013946.1/4018-3924 30538:Lama pacos
(alpaca)
Length = 95
Score = 93.7 bits (47), Expect = 3e-19
Identities = 76/85 (89%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 1 tcattccttcagtgttgaaacaatctctgctgaaccaggctccaaactacgttcactgga 60
||||||| |||||||||||||||||||||||||||||| || || | ||||||||||
Sbjct: 2 tcattccctcagtgttgaaacaatctctgctgaaccagattctaa---aagttcactgga 58
Query: 61 gtttgtttcaatattgcaagaatga 85
||||||||||| |||||||||||||
Sbjct: 59 gtttgtttcaacattgcaagaatga 83
>RF00937;mir-653;AC161368.2/145297-145394 10090:Mus musculus
(house mouse)
Length = 98
Score = 91.7 bits (46), Expect = 1e-18
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 1 tcattccttcagtgttgaaacaatctctgctgaaccaggctccaaactacgttcactgga 60
|||||| ||||||||||||||||||||| |||||||| |||||||| ||||||||||
Sbjct: 2 tcattctttcagtgttgaaacaatctctactgaaccaagctccaaagcgagttcactgga 61
Query: 61 gtttgtttcaatattgca 78
|||||||||| |||||||
Sbjct: 62 gtttgtttcagtattgca 79
>RF00937;mir-653;AAGW01691909.1/116-19 9986:Oryctolagus cuniculus
(rabbit)
Length = 98
Score = 71.9 bits (36), Expect = 1e-12
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 2 cattccttcagtgttgaaacaatctctgctgaaccaggctccaaactacgttcactggag 61
||||| ||||||||||||||| |||| |||| ||||| ||| | |||||||||||
Sbjct: 3 cattctttcagtgttgaaacatcctctattgaattaggctttcaaccaagttcactggag 62
Query: 62 tttgtttcaatattgcaagaatga 85
||||||||||||||||||||||||
Sbjct: 63 tttgtttcaatattgcaagaatga 86
>RF00937;mir-653;ABRN01117807.1/19679-19585 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 95
Score = 63.9 bits (32), Expect = 3e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 4 ttccttcagtgttgaaacaatctctgctgaaccagg 39
|||| |||||||||||||||||||||||||||||||
Sbjct: 5 ttccctcagtgttgaaacaatctctgctgaaccagg 40
>RF00937;mir-653;AAFC03096979.1/9216-9311 9913:Bos taurus (cattle)
Length = 96
Score = 60.0 bits (30), Expect = 5e-09
Identities = 72/85 (84%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 tcattccttcagtgttgaaacaatctctgctgaaccaggctccaaactacgttcactgga 60
||||||| ||||||||||||||||||||| ||||||| | | | | | ||||||||||
Sbjct: 2 tcattccctcagtgttgaaacaatctctgttgaaccatgtt--acaggaagttcactgga 59
Query: 61 gtttgtttcaatattgcaagaatga 85
||||||||||| |||| | ||||||
Sbjct: 60 gtttgtttcaacattggaggaatga 84
>RF00937;mir-653;AAGV020669408.1/1391-1294 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 98
Score = 54.0 bits (27), Expect = 3e-07
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 1 tcattccttcagtgttgaaacaatctctgctgaaccaggctccaaactacgttcactgga 60
||||| ||||||||||||||||||||||| ||| | | | |||| | ||||||||||
Sbjct: 2 tcatttcttcagtgttgaaacaatctctggtgagctaagtcccaagtcatgttcactgga 61
Query: 61 gtttgtttcaa 71
|||||||||||
Sbjct: 62 gtttgtttcaa 72
>RF00937;mir-653;ABVD01342338.1/2080-1983 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 98
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tcattccttcagtgttgaaacaatctctg 29
||||||||||||||||| |||||||||||
Sbjct: 2 tcattccttcagtgttggaacaatctctg 30
>RF00937;mir-653;ABRQ01031627.1/4948-4852 9813:Procavia capensis
(cape rock hyrax)
Length = 97
Score = 46.1 bits (23), Expect = 7e-05
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 1 tcattccttcagtgttgaaacaatctctgctgaaccaggctccaaactacgttcactgga 60
||||||||||||| |||||||| ||||| | |||||| |||||| | |||||||| |
Sbjct: 2 tcattccttcagtactgaaacaagctctggttaaccagatcccaaacaaggttcactgaa 61
Query: 61 gtttgtt 67
|||||||
Sbjct: 62 gtttgtt 68
