miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAGW01206554.1/3410-3488 9986:Oryctolagus
cuniculus (rabbit)
Length = 79
Score = 121 bits (61), Expect = 2e-27
Identities = 74/77 (96%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 12 gatatttgaggagaggttatccgtgttatgttcgcttcattcatcatgaataatacatgg 71
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 gatatttgaggagaggttaaccgtgttatgttcgcttg-ttcatcatgaataatacatgg 59
Query: 72 ttaacctctttttgaat 88
|||||||||||||||||
Sbjct: 60 ttaacctctttttgaat 76
>RF00641;mir-154;AAIY01688747.1/914-993 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 111 bits (56), Expect = 2e-24
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 12 gatatttgaggagaggttatccgtgttatgttcgcttcattcatcatgaataatacatgg 71
||||||||||| ||||||||||||||| |||||| |||||| |||||||||||||||||
Sbjct: 1 gatatttgaggggaggttatccgtgttctgttcgtgtcattcgtcatgaataatacatgg 60
Query: 72 ttaacctctttttgaatatc 91
|||||||||||||||||||
Sbjct: 61 ataacctctttttgaatatc 80
>RF00641;mir-154;AAGU02865591.1/857-936 9785:Loxodonta africana
(African savanna elephant)
Length = 80
Score = 103 bits (52), Expect = 4e-22
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 12 gatatttgaggagaggttatccgtgttatgttcgcttcattcatcatgaataatacatgg 71
||||||| ||||||||||||| ||||| ||||| ||||||||||||| ||||||||||||
Sbjct: 1 gatatttaaggagaggttatctgtgttctgttcacttcattcatcataaataatacatgg 60
Query: 72 ttaacctctttttgaatatc 91
|||||||||| ||||||||
Sbjct: 61 ataacctctttctgaatatc 80
>RF00641;mir-154;ABRP01151524.1/5612-5691 132908:Pteropus vampyrus
(large flying fox)
Length = 80
Score = 91.7 bits (46), Expect = 2e-18
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 14 tatttgaggagaggttatccgtgttatgttcgcttcattcatcatgaataatacatggtt 73
||||||||||||||||| || |||| || || || | |||||||||||||||||||||||
Sbjct: 3 tatttgaggagaggttagccatgttgtgctcactccgttcatcatgaataatacatggtt 62
Query: 74 aacctctttttgaatatc 91
|||||||||| |||||||
Sbjct: 63 aacctcttttggaatatc 80
>RF00641;mir-154;ABRQ01054374.1/1158-1237 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 87.7 bits (44), Expect = 2e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 12 gatatttgaggagaggttatccgtgttatgttcgcttcattcatcatgaataatacatgg 71
|||||||||||||||||||| | |||| |||| || || ||||| ||||||||||||||
Sbjct: 1 gatatttgaggagaggttattcatgttctgtttgcgtctttcattgtgaataatacatgg 60
Query: 72 ttaacctctttttgaatatc 91
|||||||||||||||||||
Sbjct: 61 ataacctctttttgaatatc 80
>RF00641;mir-154;AAGV020362616.1/1264-1343 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 13 atatttgaggagaggttatccgtgttatgttcgcttcattcatcatgaataatacatggt 72
||||||||||||||||| ||| | ||| |||| | |||| |||||| |||||| ||
Sbjct: 2 atatttgaggagaggttgtccatcttaagttcaccccatttgtcatgagtaatacccagt 61
Query: 73 taacctctttttgaatatc 91
|||||||||||||||||||
Sbjct: 62 taacctctttttgaatatc 80
