miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01897;mir-188;ABRT010259440.1/16-121 9478:Tarsius syrichta
(Philippine tarsier)
Length = 106
Score = 151 bits (76), Expect = 2e-36
Identities = 91/96 (94%)
Strand = Plus / Plus
Query: 1 ctgctccttctcctgtacccattgcatatcggagttgtgaattctgaaagcacctcctgt 60
||||||||||||| ||||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct: 11 ctgctccttctcccatacccattgcatatcggagttgtgagttctcaaaacacctcctgt 70
Query: 61 gtgcatggattacaggagggcgagccttgtcatcat 96
||||||||||||||||||||||||||||||||||||
Sbjct: 71 gtgcatggattacaggagggcgagccttgtcatcat 106
>RF01897;mir-188;AAGW01074233.1/428-323 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 135 bits (68), Expect = 1e-31
Identities = 90/96 (93%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 1 ctgctccttctcctgtacccattgcatatcggagttgtgaattctgaaagcacctcctgt 60
|||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||
Sbjct: 11 ctgctccttctcctgtacccattgcatatcggagttgtaaattctcaaaacacctcctgt 70
Query: 61 gtgcatggattacaggagggcgagc-cttgtcatca 95
||||||||||| |||||||| |||| ||||||||||
Sbjct: 71 gtgcatggattgcaggagggtgagctcttgtcatca 106
>RF01897;mir-188;AAKN02053571.1/50409-50514 10141:Cavia porcellus
(domestic guinea pig)
Length = 106
Score = 95.6 bits (48), Expect = 1e-19
Identities = 84/96 (87%)
Strand = Plus / Plus
Query: 1 ctgctccttctcctgtacccattgcatatcggagttgtgaattctgaaagcacctcctgt 60
||||||||| ||| |||||||||||||||||||||||||||||| ||| | |||||||
Sbjct: 11 ctgctccttttcccatacccattgcatatcggagttgtgaattcttaaaatatctcctgt 70
Query: 61 gtgcatggattacaggagggcgagccttgtcatcat 96
||||||||||| |||||| |||| ||||||||||
Sbjct: 71 atgcatggattataggaggatgagctttgtcatcat 106
>RF01897;mir-188;ABRQ01341134.1/10626-10731 9813:Procavia capensis
(cape rock hyrax)
Length = 106
Score = 85.7 bits (43), Expect = 1e-16
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 5 tccttctcctgtacccattgcatatcggagttgtgaattctgaaagcacctcctgtgtgc 64
||||||||| |||||||||||||| |||||||||| |||| ||| |||||||| | |||
Sbjct: 15 tccttctcccatacccattgcatattggagttgtgatttctcaaaacacctcctatatgc 74
Query: 65 atggattacaggagg 79
|||||||||||||||
Sbjct: 75 atggattacaggagg 89
