miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00340;SNORA36;ABDC01299701.1/1392-1522 30608:Microcebus murinus
(gray mouse lemur)
Length = 131
Score = 83.8 bits (42), Expect = 3e-16
Identities = 67/74 (90%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gaacattgaaacaggctaggaaaactgattggatagaaaatattactctattcatttatc 60
|||||||||||| ||||| | || |||||||||||||||||||||||||||||||||||
Sbjct: 58 gaacattgaaactggctacgggaaatgattggatagaaaatattactctattcatttatc 117
Query: 61 tcctagcctacaaa 74
|| ||||||||||
Sbjct: 118 -cccagcctacaaa 130
>RF00340;SNORA36;ABRP01297130.1/1518-1622 132908:Pteropus vampyrus
(large flying fox)
Length = 105
Score = 81.8 bits (41), Expect = 1e-15
Identities = 60/65 (92%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 1 gaacattgaaacaggctaggaaaac-tgattggatagaaaatattactctattcatttat 59
|||||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||
Sbjct: 28 gaacattgaaacaggctaagaaaaaataattggataggaaatattactctattcatttat 87
Query: 60 ctcct 64
|||||
Sbjct: 88 ctcct 92
>RF00340;SNORA36;AAPE01421970.1/734-602 59463:Myotis lucifugus
(little brown bat)
Length = 133
Score = 67.9 bits (34), Expect = 2e-11
Identities = 65/74 (87%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gaacattgaaacaggctaggaaaactgattggatag-aaaatattactctattcatttat 59
||||||||||||||||||||| || ||| ||| ||| ||||| | |||||||||| ||||
Sbjct: 58 gaacattgaaacaggctaggataaatgaatgggtagaaaaatctgactctattcacttat 117
Query: 60 ctcctagcctacaa 73
|||| |||||||||
Sbjct: 118 ctcccagcctacaa 131
>RF00340;SNORA36;AAGU02530612.1/4787-4918 9785:Loxodonta africana
(African savanna elephant)
Length = 132
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 3 acattgaaacaggctaggaaaactgattggatagaaaatattactctattcatttatctc 62
|||||||||| ||||||| ||| ||| ||||||||||| ||| || ||||||||||| ||
Sbjct: 60 acattgaaacgggctagggaaaatgaatggatagaaaacatttctttattcatttatttc 119
Query: 63 ctagcctaca 72
| ||||||||
Sbjct: 120 ccagcctaca 129
>RF00340;SNORA36;AAKN02019180.1/128364-128494 10141:Cavia porcellus
(domestic guinea pig)
Length = 131
Score = 65.9 bits (33), Expect = 6e-11
Identities = 46/49 (93%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 26 tgattggatagaaaatattactctattcatttatctcctagcctacaaa 74
|||||||||||||||| ||| ||||||||||||||| ||||||||||||
Sbjct: 83 tgattggatagaaaatgttattctattcatttatct-ctagcctacaaa 130
>RF00340;SNORA36;ABVD01199245.1/1451-1320 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 132
Score = 63.9 bits (32), Expect = 3e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 7 tgaaacaggctaggaaaactgattggatagaaaatattactctattcatttatctcctag 66
|||||||||||||| || |||||||||||||||||||| ||| | ||||| |||| ||
Sbjct: 64 tgaaacaggctaggggaaatgattggatagaaaatattattctgtccatttgtctctcag 123
Query: 67 cctacaaa 74
||||||||
Sbjct: 124 cctacaaa 131
>RF00340;SNORA36;AC188648.11/111060-110940 9615:Canis lupus
familiaris (dog)
Length = 121
Score = 63.9 bits (32), Expect = 3e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 39 aatattactctattcatttatctcctagcctacaaa 74
||||||||||||||||||||||||| ||||||||||
Sbjct: 85 aatattactctattcatttatctcccagcctacaaa 120
>RF00340;SNORA36;AAGW01325785.1/1194-1323 9986:Oryctolagus cuniculus
(rabbit)
Length = 130
Score = 58.0 bits (29), Expect = 2e-08
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gaacattgaaacaggctaggaaaactgattggatagaaaatattactctattcatttatc 60
|||||||||||| ||||||| ||| | || ||||||||||| ||| ||||||||| ||||
Sbjct: 57 gaacattgaaactggctagggaaaatcatcggatagaaaatgttattctattcatatatc 116
Query: 61 tcctagcctacaa 73
|| |||||||||
Sbjct: 117 -cccagcctacaa 128
>RF00340;SNORA36;AAPE01499728.1/230-104 59463:Myotis lucifugus
(little brown bat)
Length = 127
Score = 56.0 bits (28), Expect = 6e-08
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 26 tgattggatagaaaatattactctattcatttatctcctagcct 69
||||||||||||||| ||| ||||||||||||| |||| |||||
Sbjct: 78 tgattggatagaaaacattgctctattcatttacctcccagcct 121
>RF00340;SNORA36;ABRN01173408.1/3505-3640 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 136
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 42 attactctattcatttatctcctagcctaca 72
||||||||||||||||| |||||||||||||
Sbjct: 103 attactctattcatttacctcctagcctaca 133
>RF00340;SNORA36;AAPE01522613.1/608-478 59463:Myotis lucifugus
(little brown bat)
Length = 131
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 33 atagaaaatattactctattcatttatctcctagccta 70
||||||||| |||||||||||||||| |||| ||||||
Sbjct: 89 atagaaaattttactctattcatttacctcccagccta 126
>RF00340;SNORA36;AC158963.3/185991-186122 10090:Mus musculus (house
mouse)
Length = 132
Score = 52.0 bits (26), Expect = 1e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 1 gaacattgaaacaggctaggaaaactgattggatagaaaatattactctattcattta 58
|||||||||| | |||| || ||| ||| ||||||||||| |||| ||||||||||||
Sbjct: 58 gaacattgaagctggctggggaaaatgactggatagaaaacattattctattcattta 115
>RF00340;SNORA36;CABD01065828.1/6971-6850 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 122
Score = 50.1 bits (25), Expect = 4e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 26 tgattggatagaaaatattactctattcatttatctcctagcctacaaa 74
||||||| |||||| ||||| ||||||||||| |||| ||||||||||
Sbjct: 73 tgattgggtagaaagtattattctattcatttgcctcccagcctacaaa 121
>RF00340;SNORA36;AAPY01076315.1/1269-1398 37347:Tupaia belangeri
(northern tree shrew)
Length = 130
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 26 tgattggatagaaaatattactctattc 53
|||||| |||||||||||||||||||||
Sbjct: 82 tgattgaatagaaaatattactctattc 109
>RF00340;SNORA36;AAHX01095142.1/71787-71884 10116:Rattus
norvegicus (Norway rat)
Length = 98
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 27 gattggatagaaaatattactctattcattta 58
|||||||||||||| |||| ||||||||||||
Sbjct: 50 gattggatagaaaacattattctattcattta 81
>RF00340;SNORA36;AAKN02004756.1/29029-28904 10141:Cavia porcellus
(domestic guinea pig)
Length = 126
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 29 ttggatagaaaatattactctattcatttatc 60
||||||||||||| ||| ||||||||||||||
Sbjct: 82 ttggatagaaaatgttattctattcatttatc 113
>RF00340;SNORA36;AAGW01409545.1/1608-1507 9986:Oryctolagus cuniculus
(rabbit)
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 30 tggatagaaaatattactctattcatttatctcctagcctacaa 73
||||||||| ||| ||| ||||||||||||| |||||||||||
Sbjct: 57 tggatagaaggtatcactgtattcatttatcttctagcctacaa 100
>RF00340;SNORA36;AAIY01051702.1/1601-1471 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 131
Score = 48.1 bits (24), Expect = 2e-05
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 3 acattgaaacaggctaggaaaactgattggatagaaaatattactctattca 54
||||| ||||||||| || ||| |||| || |||||||||||| ||||||||
Sbjct: 59 acattaaaacaggcttgggaaaatgatggggtagaaaatattattctattca 110
>RF00340;SNORA36;AAIY01703741.1/615-736 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 122
Score = 48.1 bits (24), Expect = 2e-05
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 3 acattgaaacaggctaggaaaactgattggatagaaaatattactctattca 54
||||| ||||||||| || ||| ||| ||| |||||||||||| ||||||||
Sbjct: 50 acattaaaacaggcttgggaaaatgactgggtagaaaatattattctattca 101
>RF00340;SNORA36;AAIY01139424.1/1111-986 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 126
Score = 48.1 bits (24), Expect = 2e-05
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 3 acattgaaacaggctaggaaaactgattggatagaaaatattactctattca 54
||||| ||||||||| || ||| ||| ||| |||||||||||| ||||||||
Sbjct: 54 acattaaaacaggcttgggaaaatgactgggtagaaaatattattctattca 105
>RF00340;SNORA36;ABRQ01157442.1/4498-4367 9813:Procavia capensis
(cape rock hyrax)
Length = 132
Score = 48.1 bits (24), Expect = 2e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 27 gattggatagaaaatattactctattcatttatctcctagcctacaaa 74
|||||||||||||| || ||||| || ||| ||||||||||||||||
Sbjct: 84 gattggatagaaaacatcactctgtttgtttttctcctagcctacaaa 131
>RF00340;SNORA36;AAFC03040432.1/97711-97588 9913:Bos taurus (cattle)
Length = 124
Score = 46.1 bits (23), Expect = 6e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 34 tagaaaatattactctattcatttatctcctagcc 68
||||||||||| ||||||| ||||| |||||||||
Sbjct: 83 tagaaaatatttctctattaatttacctcctagcc 117
>RF00340;SNORA36;ACBE01024912.1/965-1092 9685:Felis catus (domestic
cat)
Length = 128
Score = 46.1 bits (23), Expect = 6e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 40 atattactctattcatttatctcctagcctacaaa 74
|||| |||||||||||| |||||| ||||||||||
Sbjct: 93 atatcactctattcattgatctcccagcctacaaa 127
>RF00340;SNORA36;AAIY01046586.1/1465-1334 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 132
Score = 46.1 bits (23), Expect = 6e-05
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 3 acattgaaacaggctaggaaaactgattggatagaaaatattactctattc 53
||||| ||||||||| |||||| || ||| |||||||||||| |||||||
Sbjct: 60 acattaaaacaggctcggaaaaatgcctgggtagaaaatattattctattc 110
>RF00340;SNORA36;AALT01260563.1/1764-1632 42254:Sorex araneus
(European shrew)
Length = 133
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 41 tattactctattcatttatctcctagcctacaaa 74
|||| |||||||||||| |||| |||||||||||
Sbjct: 99 tatttctctattcatttctctcttagcctacaaa 132
>RF00340;SNORA36;CAAA01016764.1/57041-56907 10090:Mus musculus
(house mouse)
Length = 135
Score = 44.1 bits (22), Expect = 2e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 27 gattggatagaaaatattactctattcatttatctcctagcctaca 72
||||| ||||| | ||||||||||||||| || ||||||||||||
Sbjct: 87 gattgaatagagagtattactctattcatatacttcctagcctaca 132
>RF00340;SNORA36;AALT01008610.1/1082-949 42254:Sorex araneus
(European shrew)
Length = 134
Score = 42.1 bits (21), Expect = 0.001
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 26 tgattggatagaaaatattactctattcatttatctcctagcctacaaa 74
||||||| ||||| |||| |||||||||||| ||||| |||||||||
Sbjct: 85 tgattgggtagaaggtatttctctattcatttctctcccggcctacaaa 133
>RF00340;SNORA36;AANN01451496.1/2498-2631 9365:Erinaceus europaeus
(western European hedgehog)
Length = 134
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 30 tggatagaaaatattactctattcattta 58
||||||||||| |||| ||||||||||||
Sbjct: 89 tggatagaaaacattattctattcattta 117
>RF00340;SNORA36;AAPE01631038.1/2914-2781 59463:Myotis lucifugus
(little brown bat)
Length = 134
Score = 42.1 bits (21), Expect = 0.001
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 26 tgattggatagaaaatattactctattcatttatctcctagcctacaaa 74
||||| |||||||| ||| ||||||||||||| |||||| |||||||
Sbjct: 85 tgatttgatagaaagcattgctctattcatttacctcctactctacaaa 133
>RF00340;SNORA36;ABRP01204575.1/8121-8254 132908:Pteropus vampyrus
(large flying fox)
Length = 134
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 30 tggatagaaaatattactctattcattta 58
|||||||||| |||||||||||||||||
Sbjct: 89 tggatagaaagcattactctattcattta 117
>RF00340;SNORA36;AAIY01065514.1/327-228 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 100
Score = 42.1 bits (21), Expect = 0.001
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 34 tagaaaatattactctattcatttatctcctagcctacaaa 74
|||||||||||||||| ||| ||||| ||| |||||||||
Sbjct: 59 tagaaaatattactctcttcgtttatttccaggcctacaaa 99
