miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00911;mir-672;ABRQ01242917.1/2151-2052 9813:Procavia capensis
(cape rock hyrax)
Length = 100
Score = 139 bits (70), Expect = 8e-33
Identities = 85/90 (94%)
Strand = Plus / Plus
Query: 8 atctagccctttagttttgaggttggtgtactgtgtgtgagtatatatatttatcacaca 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 atctagccctttagttttgaggttggtgtactgtgtgtgagtatatatatttatcacaca 67
Query: 68 taggcaatatctttgaaagtgagggtgcac 97
|| || ||||| ||||||||||||||||
Sbjct: 68 cagtcaccatcttcgaaagtgagggtgcac 97
>RF00911;mir-672;AAEX02004670.1/145900-145999 9615:Canis lupus
familiaris (dog)
Length = 100
Score = 81.8 bits (41), Expect = 2e-15
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 17 tttagttttgaggttggtgtactgtgtgtgagtatatatatttatcaca 65
|||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 17 tttagttttgagattggtgtactgtgtgtaagtatatatatttatcaca 65
>RF00911;mir-672;AANU01175026.1/15984-15890 9544:Macaca mulatta
(rhesus monkey)
Length = 95
Score = 79.8 bits (40), Expect = 6e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 37 actgtgtgtgagtatatatatttatcacacataggcaatatctttgaaagtgagggtgca 96
|||||||||||||||| |||||||||||||| || || | ||||||||||||||||||||
Sbjct: 32 actgtgtgtgagtatacatatttatcacacacagtcactgtctttgaaagtgagggtgca 91
>RF00911;mir-672;AAKN02029883.1/10222-10321 10141:Cavia porcellus
(domestic guinea pig)
Length = 100
Score = 79.8 bits (40), Expect = 6e-15
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 16 ctttagttttgaggttggtgtactgtgtgtgagtatatatatttatcacaca 67
||||||||||||||||||||||||||||||| ||||| ||||||||| ||||
Sbjct: 16 ctttagttttgaggttggtgtactgtgtgtgggtatacatatttatcccaca 67
>RF00911;mir-672;ACBE01122982.1/1416-1515 9685:Felis catus
(domestic cat)
Length = 100
Score = 71.9 bits (36), Expect = 1e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 9 tctagccctttagttttgaggttggtgtactgtgtgtgagtatatatatttatcac 64
|||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||
Sbjct: 9 tctagccctttagttttgtggttgatgtactgtgtgcaagtatatacatttatcac 64
>RF00911;mir-672;AAPE01349917.1/1832-1734 59463:Myotis lucifugus
(little brown bat)
Length = 99
Score = 65.9 bits (33), Expect = 9e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 12 agccctttagttttgaggttggtgtactgtgtgtgagtatatatatttatcac 64
||||||||||||||||| || || ||||||||||||| |||||| ||||||||
Sbjct: 12 agccctttagttttgagatttgtatactgtgtgtgagaatatatgtttatcac 64
