miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00897;mir-675;AAKN02038607.1/34464-34536 10141:Cavia porcellus
(domestic guinea pig)
Length = 73
Score = 89.7 bits (45), Expect = 4e-18
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 9 ctggcgcggagagggcccacagtgcactcagtgacactgtatgccttcaccgctcagccc 68
|||||||||||||||||||||||| ||| ||||||||||||||| | ||||||||||||
Sbjct: 9 ctggcgcggagagggcccacagtggacttggtgacactgtatgccctaaccgctcagccc 68
Query: 69 ctggg 73
|||||
Sbjct: 69 ctggg 73
>RF00897;mir-675;AF190056.1/465-536 13125:Lynx lynx (Eurasian
lynx)
Length = 72
Score = 81.8 bits (41), Expect = 1e-15
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 cccaggggctggcgcggagagggcccacagtgcactcagtgacactgtatgccttcaccg 60
||||||| |||||||||||||| ||||||| | ||| ||||||||||||||||||||||
Sbjct: 1 cccagggtctggcgcggagagg-cccacagcgtacttggtgacactgtatgccttcaccg 59
Query: 61 ctcagcccc 69
|||||||||
Sbjct: 60 ctcagcccc 68
>RF00897;mir-675;AF214115.1/794-866 230844:Peromyscus maniculatus
bairdii (prairie deer mouse)
Length = 73
Score = 52.0 bits (26), Expect = 9e-07
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 9 ctggcgcggagagggcccacagtgcactca-gtgacactgtatgccttcaccgctcagcc 67
|||||||||| ||||||||||||| || | ||| ||||||||||| | |||||||||||
Sbjct: 9 ctggcgcggaaagggcccacagtggacgcttgtg-cactgtatgccctaaccgctcagcc 67
Query: 68 cctggg 73
||||||
Sbjct: 68 cctggg 73
>RF00897;mir-675;AF190057.1/504-575 9685:Felis catus (domestic
cat)
Length = 72
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 46 tgtatgccttcaccgctcagcccctggg 73
|||||||| |||||||||||||||||||
Sbjct: 45 tgtatgccctcaccgctcagcccctggg 72