miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00897;mir-675;AAKN02038607.1/34464-34536 10141:Cavia porcellus
          (domestic guinea pig)
          Length = 73

 Score = 89.7 bits (45), Expect = 4e-18
 Identities = 60/65 (92%)
 Strand = Plus / Plus

                                                                      
Query: 9  ctggcgcggagagggcccacagtgcactcagtgacactgtatgccttcaccgctcagccc 68
          |||||||||||||||||||||||| |||  ||||||||||||||| | ||||||||||||
Sbjct: 9  ctggcgcggagagggcccacagtggacttggtgacactgtatgccctaaccgctcagccc 68

               
Query: 69 ctggg 73
          |||||
Sbjct: 69 ctggg 73




>RF00897;mir-675;AF190056.1/465-536 13125:Lynx lynx (Eurasian
          lynx)
          Length = 72

 Score = 81.8 bits (41), Expect = 1e-15
 Identities = 63/69 (91%), Gaps = 1/69 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  cccaggggctggcgcggagagggcccacagtgcactcagtgacactgtatgccttcaccg 60
          ||||||| |||||||||||||| ||||||| | |||  ||||||||||||||||||||||
Sbjct: 1  cccagggtctggcgcggagagg-cccacagcgtacttggtgacactgtatgccttcaccg 59

                   
Query: 61 ctcagcccc 69
          |||||||||
Sbjct: 60 ctcagcccc 68




>RF00897;mir-675;AF214115.1/794-866 230844:Peromyscus maniculatus
          bairdii (prairie deer mouse)
          Length = 73

 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 58/66 (87%), Gaps = 2/66 (3%)
 Strand = Plus / Plus

                                                                      
Query: 9  ctggcgcggagagggcccacagtgcactca-gtgacactgtatgccttcaccgctcagcc 67
          |||||||||| ||||||||||||| || |  ||| ||||||||||| | |||||||||||
Sbjct: 9  ctggcgcggaaagggcccacagtggacgcttgtg-cactgtatgccctaaccgctcagcc 67

                
Query: 68 cctggg 73
          ||||||
Sbjct: 68 cctggg 73




>RF00897;mir-675;AF190057.1/504-575 9685:Felis catus (domestic
          cat)
          Length = 72

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 46 tgtatgccttcaccgctcagcccctggg 73
          |||||||| |||||||||||||||||||
Sbjct: 45 tgtatgccctcaccgctcagcccctggg 72