miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00951;mir-1302;AAGU02266251.1/509-458 9785:Loxodonta africana
(African savanna elephant)
Length = 52
Score = 58.0 bits (29), Expect = 1e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 20 cccatgcaatgtttgggatatacttatactaaa 52
||||||||||||||||||||||||||| |||||
Sbjct: 19 cccatgcaatgtttgggatatacttattctaaa 51
>RF00951;mir-1302;ABRQ01257097.1/9096-9147 9813:Procavia capensis
(cape rock hyrax)
Length = 52
Score = 52.0 bits (26), Expect = 6e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 19 ccccatgcaatgtttgggatatacttatactaaa 52
||||||||||| ||||||| ||||||||||||||
Sbjct: 18 ccccatgcaatatttgggacatacttatactaaa 51
>RF00951;mir-1302;ABVD01188517.1/7377-7428 9358:Choloepus
hoffmanni (Hoffmann's two-fingered sloth)
Length = 52
Score = 50.1 bits (25), Expect = 2e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 20 cccatgcaatgtttgggatatacttatactaaa 52
|||||||||| ||||||| ||||||||||||||
Sbjct: 19 cccatgcaatatttgggacatacttatactaaa 51
>RF00951;mir-1302;AAWR02002278.1/2146-2197 9796:Equus caballus
(horse)
Length = 52
Score = 50.1 bits (25), Expect = 2e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 20 cccatgcaatgtttgggatatacttatactaaa 52
|||||||||| ||||||| ||||||||||||||
Sbjct: 19 cccatgcaatatttgggacatacttatactaaa 51
>RF00951;mir-1302;AANU01172280.1/17832-17781 9544:Macaca mulatta
(rhesus monkey)
Length = 52
Score = 48.1 bits (24), Expect = 9e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 cccatgcaatgtttgggatatacttatactaa 51
|||||||||| |||||| ||||||||||||||
Sbjct: 19 cccatgcaatatttgggctatacttatactaa 50
>RF00951;mir-1302;CABD01581572.1/347-296 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 52
Score = 44.1 bits (22), Expect = 1e-04
Identities = 45/52 (86%), Gaps = 3/52 (5%)
Strand = Plus / Plus
Query: 1 tttagtataagtatacacccccatgcaatgtttgggatatacttatactaaa 52
||||||||||||||| ||||||| || |||||||||||||||| |||||
Sbjct: 3 tttagtataagtatat---cccatgccatatttgggatatacttatgctaaa 51
>RF00951;mir-1302;AAGU02381588.1/737-686 9785:Loxodonta africana
(African savanna elephant)
Length = 52
Score = 44.1 bits (22), Expect = 1e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 20 cccatgcaatgtttgggatatacttatact 49
||||||||| |||||||||||||||||||
Sbjct: 19 cccatgcaagatttgggatatacttatact 48
>RF00951;mir-1302;ABRR01359120.1/1625-1676 30538:Lama pacos
(alpaca)
Length = 52
Score = 42.1 bits (21), Expect = 6e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 20 cccatgcaatgtttgggatatacttatactaaa 52
|||||||||| ||||||| || |||||||||||
Sbjct: 19 cccatgcaatatttgggacatgcttatactaaa 51
>RF00951;mir-1302;ABRN01198266.1/2058-2109 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 52
Score = 42.1 bits (21), Expect = 6e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 20 cccatgcaatgtttgggatatacttatactaaa 52
|||||||||| || ||||| |||||||||||||
Sbjct: 19 cccatgcaatattggggatgtacttatactaaa 51
>RF00951;mir-1302;AAEX02034265.1/150833-150884 9615:Canis lupus
familiaris (dog)
Length = 52
Score = 42.1 bits (21), Expect = 6e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 20 cccatgcaatgtttgggatatacttatactaaa 52
|||||| |||||| |||| ||||||||||||||
Sbjct: 19 cccatgtaatgttggggacatacttatactaaa 51
>RF00951;mir-1302;ABRT010971057.1/750-699 9478:Tarsius syrichta
(Philippine tarsier)
Length = 52
Score = 42.1 bits (21), Expect = 6e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 20 cccatgcaatgtttgggatatacttatac 48
|||||||||| ||||||||||| ||||||
Sbjct: 19 cccatgcaatatttgggatataattatac 47
>RF00951;mir-1302;CABD01607770.2/408-357 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 52
Score = 42.1 bits (21), Expect = 6e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 20 cccatgcaatgtttgggatatacttatactaaa 52
|||||||| | ||||||| ||||||||||||||
Sbjct: 19 cccatgcagtatttgggacatacttatactaaa 51
