miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32643_rno-let-7d:mirbase
Length = 98
Score = 172 bits (87), Expect = 3e-44
Identities = 93/95 (97%)
Strand = Plus / Plus
Query: 3 tgggctcctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaag 62
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 tgggctcctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaag 60
Query: 63 gagttaactatacaacctgctgcctttcttagggc 97
||||||||||||| |||||||||||||||||||||
Sbjct: 61 gagttaactatacgacctgctgcctttcttagggc 95
>33099_rno-mir-3596b:mirbase
Length = 95
Score = 170 bits (86), Expect = 1e-43
Identities = 92/94 (97%)
Strand = Plus / Minus
Query: 4 gggctcctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaagg 63
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 95 gggctcctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaagg 36
Query: 64 agttaactatacaacctgctgcctttcttagggc 97
|||||||||||| |||||||||||||||||||||
Sbjct: 35 agttaactatacgacctgctgcctttcttagggc 2
>25873_gga-let-7d:mirbase
Length = 103
Score = 168 bits (85), Expect = 5e-43
Identities = 97/101 (96%)
Strand = Plus / Plus
Query: 3 tgggctcctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaag 62
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 3 tgggctcctaggaagaggtagtgggttgcatagttttagggcagggattttgctcacaag 62
Query: 63 gagttaactatacaacctgctgcctttcttagggctctatt 103
||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 63 gaggtaactatacaacctgctgcctttcttagggctttatt 103
>31411_oan-let-7d:mirbase
Length = 116
Score = 168 bits (85), Expect = 5e-43
Identities = 100/105 (95%)
Strand = Plus / Plus
Query: 2 atgggctcctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaa 61
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct: 10 atgggctcctaggaagaggtagtaggttgcatagttttagggcagtgattttgctcataa 69
Query: 62 ggagttaactatacaacctgctgcctttcttagggctctattatt 106
|| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 70 ggtgttaactatacaacctgctgcctttcttagggctttattatt 114
>31757_mmu-let-7d:mirbase
Length = 103
Score = 168 bits (85), Expect = 5e-43
Identities = 94/97 (96%)
Strand = Plus / Plus
Query: 1 aatgggctcctaggaagaggtagtaggttgcatagttttagggcagggattttgcccaca 60
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 aatgggttcctaggaagaggtagtaggttgcatagttttagggcagagattttgcccaca 60
Query: 61 aggagttaactatacaacctgctgcctttcttagggc 97
||||||||||||||| |||||||||||||||||||||
Sbjct: 61 aggagttaactatacgacctgctgcctttcttagggc 97
>26382_tgu-let-7d:mirbase
Length = 92
Score = 159 bits (80), Expect = 5e-40
Identities = 89/92 (96%)
Strand = Plus / Plus
Query: 6 gctcctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggag 65
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 1 gctcctaggaagaggtagtaggttgcatagttttagggcagggattttgctcagaaggag 60
Query: 66 ttaactatacaacctgctgcctttcttagggc 97
|||||||||||||||||||||||||||||||
Sbjct: 61 gtaactatacaacctgctgcctttcttagggc 92
>26932_eca-let-7d:mirbase
Length = 87
Score = 157 bits (79), Expect = 2e-39
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 9 cctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggagtta 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 cctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggagata 60
Query: 69 actatacaacctgctgcctttcttagg 95
||||||| |||||||||||||||||||
Sbjct: 61 actatacgacctgctgcctttcttagg 87
>27634_mml-let-7d:mirbase
Length = 87
Score = 157 bits (79), Expect = 2e-39
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 9 cctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggagtta 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 cctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggta 60
Query: 69 actatacaacctgctgcctttcttagg 95
||||||| |||||||||||||||||||
Sbjct: 61 actatacgacctgctgcctttcttagg 87
>28344_hsa-let-7d:mirbase
Length = 87
Score = 157 bits (79), Expect = 2e-39
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 9 cctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggagtta 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 cctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggta 60
Query: 69 actatacaacctgctgcctttcttagg 95
||||||| |||||||||||||||||||
Sbjct: 61 actatacgacctgctgcctttcttagg 87
>30736_ppy-let-7d:mirbase
Length = 87
Score = 157 bits (79), Expect = 2e-39
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 9 cctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggagtta 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 cctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggta 60
Query: 69 actatacaacctgctgcctttcttagg 95
||||||| |||||||||||||||||||
Sbjct: 61 actatacgacctgctgcctttcttagg 87
>30131_ptr-let-7d:mirbase
Length = 86
Score = 155 bits (78), Expect = 8e-39
Identities = 84/86 (97%)
Strand = Plus / Plus
Query: 10 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggagttaa 69
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggtaa 60
Query: 70 ctatacaacctgctgcctttcttagg 95
|||||| |||||||||||||||||||
Sbjct: 61 ctatacgacctgctgcctttcttagg 86
>33113_bta-let-7d:mirbase
Length = 87
Score = 149 bits (75), Expect = 5e-37
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 9 cctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggagtta 68
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 1 cctaggaagaggtagtaggttgcatagttttcgggcagggattttgcccacaaggaggta 60
Query: 69 actatacaacctgctgcctttcttagg 95
||||||| |||||||||||||||||||
Sbjct: 61 actatacgacctgctgcctttcttagg 87
>25871_gga-let-7b:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 66/79 (83%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 12 aggaagaggtagtaggttgcatagttttagggcagggattttgcccaca--aggagttaa 69
|||| |||||||||||||| | |||| |||| || |||||||||| | ||||| |||
Sbjct: 2 aggatgaggtagtaggttgtgtggtttcagggtagtgattttgccccaatcaggagataa 61
Query: 70 ctatacaacctgctgcctt 88
||||||||||| |||||||
Sbjct: 62 ctatacaacctactgcctt 80
>26375_tgu-let-7a-1:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 17 gaggtagtaggttgcatagttttagggc 44
|||||||||||||| |||||||||||||
Sbjct: 12 gaggtagtaggttgtatagttttagggc 39
>26379_tgu-let-7b:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 66/79 (83%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 12 aggaagaggtagtaggttgcatagttttagggcagggattttgcccaca--aggagttaa 69
|||| |||||||||||||| | |||| |||| || |||||||||| | ||||| |||
Sbjct: 7 aggatgaggtagtaggttgtgtggtttcagggtagtgattttgccccaatcaggagataa 66
Query: 70 ctatacaacctgctgcctt 88
||||||||||| |||||||
Sbjct: 67 ctatacaacctactgcctt 85
>27632_mml-let-7b:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 1e-06
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 17 gaggtagtaggttgcatagttttagggcagggattttgcccacaaggagttaactataca 76
|||||||||||||| | |||| ||||||| ||| |||||| || || ||||||||||
Sbjct: 7 gaggtagtaggttgtgtggtttcagggcagtgatgttgcccctcagaagataactataca 66
Query: 77 acctgctgcctt 88
|||| |||||||
Sbjct: 67 acctactgcctt 78
>30129_ptr-let-7b:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 17 gaggtagtaggttgcatagttttagggcagggattttgcccacaaggagttaactataca 76
|||||||||||||| | |||| ||||||| ||| |||||| || || ||||||||||
Sbjct: 6 gaggtagtaggttgtgtggtttcagggcagtgatgttgcccctcagaagataactataca 65
Query: 77 acctgctgcctt 88
|||| |||||||
Sbjct: 66 acctactgcctt 77
>30734_ppy-let-7b:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 1e-06
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 17 gaggtagtaggttgcatagttttagggcagggattttgcccacaaggagttaactataca 76
|||||||||||||| | |||| ||||||| ||| |||||| || || ||||||||||
Sbjct: 7 gaggtagtaggttgtgtggtttcagggcagtgatgttgcccctcagaagataactataca 66
Query: 77 acctgctgcctt 88
|||| |||||||
Sbjct: 67 acctactgcctt 78
>34171_dre-let-7b:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 61 aggagttaactatacaacctgctgcctt 88
|||||||||||||||||||| |||||||
Sbjct: 57 aggagttaactatacaacctactgcctt 84
>25868_gga-let-7a-1:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 gaggtagtaggttgcatagttttaggg 43
|||||||||||||| ||||||||||||
Sbjct: 14 gaggtagtaggttgtatagttttaggg 40
>25870_gga-let-7a-3:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 gaggtagtaggttgcatagttttaggg 43
|||||||||||||| ||||||||||||
Sbjct: 5 gaggtagtaggttgtatagttttaggg 31
>26377_tgu-let-7a-3:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 gaggtagtaggttgcatagttttaggg 43
|||||||||||||| ||||||||||||
Sbjct: 62 gaggtagtaggttgtatagttttaggg 88
>27318_mdo-let-7a-1:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 gaggtagtaggttgcatagttttaggg 43
|||||||||||||| ||||||||||||
Sbjct: 16 gaggtagtaggttgtatagttttaggg 42
>27629_mml-let-7a-1:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 gaggtagtaggttgcatagttttaggg 43
|||||||||||||| ||||||||||||
Sbjct: 7 gaggtagtaggttgtatagttttaggg 33
>28339_hsa-let-7a-1:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 gaggtagtaggttgcatagttttaggg 43
|||||||||||||| ||||||||||||
Sbjct: 7 gaggtagtaggttgtatagttttaggg 33
>30126_ptr-let-7a-1:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 gaggtagtaggttgcatagttttaggg 43
|||||||||||||| ||||||||||||
Sbjct: 6 gaggtagtaggttgtatagttttaggg 32
>30731_ppy-let-7a-1:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 gaggtagtaggttgcatagttttaggg 43
|||||||||||||| ||||||||||||
Sbjct: 7 gaggtagtaggttgtatagttttaggg 33
>31752_mmu-let-7a-1:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 gaggtagtaggttgcatagttttaggg 43
|||||||||||||| ||||||||||||
Sbjct: 14 gaggtagtaggttgtatagttttaggg 40
>32638_rno-let-7a-1:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 gaggtagtaggttgcatagttttaggg 43
|||||||||||||| ||||||||||||
Sbjct: 14 gaggtagtaggttgtatagttttaggg 40
>33108_bta-let-7a-1:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 gaggtagtaggttgcatagttttaggg 43
|||||||||||||| ||||||||||||
Sbjct: 7 gaggtagtaggttgtatagttttaggg 33
>33899_ssc-let-7a-2:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 gaggtagtaggttgcatagttttaggg 43
|||||||||||||| ||||||||||||
Sbjct: 12 gaggtagtaggttgtatagttttaggg 38
>34165_dre-let-7a-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 gaggtagtaggttgcatagttttaggg 43
|||||||||||||| ||||||||||||
Sbjct: 12 gaggtagtaggttgtatagttttaggg 38
>34526_fru-let-7a-2:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 gaggtagtaggttgcatagttttaggg 43
|||||||||||||| ||||||||||||
Sbjct: 5 gaggtagtaggttgtatagttttaggg 31
>34674_tni-let-7a-2:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 gaggtagtaggttgcatagttttaggg 43
|||||||||||||| ||||||||||||
Sbjct: 13 gaggtagtaggttgtatagttttaggg 39
>25408_pma-let-7a-1:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 8e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 3 tgggctcctaggaagaggtagtaggttgcatagttttaggg 43
||||||||| || |||||||||||||| ||||||| ||||
Sbjct: 3 tgggctcctgggttgaggtagtaggttgtatagtttaaggg 43
>34528_fru-let-7b:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 8e-05
Identities = 61/73 (83%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 17 gaggtagtaggttgcatagttttagggcagggattttgccc-acaaggagttaactatac 75
|||||||||||||| | |||| |||| | |||||||||| | ||||| |||||||||
Sbjct: 7 gaggtagtaggttgtgtggtttcagggttgtgattttgccccatcaggagctaactatac 66
Query: 76 aacctgctgcctt 88
||||| |||||||
Sbjct: 67 aacctactgcctt 79
>34676_tni-let-7b:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 8e-05
Identities = 61/73 (83%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 17 gaggtagtaggttgcatagttttagggcagggattttgccc-acaaggagttaactatac 75
|||||||||||||| | |||| |||| | |||||||||| | ||||| |||||||||
Sbjct: 7 gaggtagtaggttgtgtggtttcagggttgtgattttgccccatcaggagctaactatac 66
Query: 76 aacctgctgcctt 88
||||| |||||||
Sbjct: 67 aacctactgcctt 79
>28342_hsa-let-7b:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 17 gaggtagtaggttgcatagttttagggcagggattttgcccacaaggagttaactataca 76
|||||||||||||| | |||| ||||||| ||| |||||| | || ||||||||||
Sbjct: 7 gaggtagtaggttgtgtggtttcagggcagtgatgttgcccctcggaagataactataca 66
Query: 77 acctgctgcctt 88
|||| |||||||
Sbjct: 67 acctactgcctt 78
>31754_mmu-let-7b:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 17 gaggtagtaggttgcatagttttagggcagggattttgcccacaaggagttaactataca 76
|||||||||||||| | |||| ||||||| ||| |||||| | || ||||||||||
Sbjct: 8 gaggtagtaggttgtgtggtttcagggcagtgatgttgcccctccgaagataactataca 67
Query: 77 acctgctgcctt 88
|||| |||||||
Sbjct: 68 acctactgcctt 79
