miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33156_bta-mir-27b:mirbase
Length = 97
Score = 149 bits (75), Expect = 4e-37
Identities = 90/95 (94%)
Strand = Plus / Plus
Query: 1 acctctctgacaaggtgcagagcttagccgattggtgaacagtcactgatttcctctttg 60
||||||||||| |||||||||||||||| |||||||||||||| |||| ||||| |||||
Sbjct: 1 acctctctgacgaggtgcagagcttagctgattggtgaacagtgactggtttccgctttg 60
Query: 61 ttcacagtggctaagttctgcacctgaagagaagg 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcacagtggctaagttctgcacctgaagagaagg 95
>27674_mml-mir-27b:mirbase
Length = 97
Score = 141 bits (71), Expect = 1e-34
Identities = 89/95 (93%)
Strand = Plus / Plus
Query: 1 acctctctgacaaggtgcagagcttagccgattggtgaacagtcactgatttcctctttg 60
|||||||| ||||||||||||||||||| |||||||||||||| | || ||||| |||||
Sbjct: 1 acctctctaacaaggtgcagagcttagctgattggtgaacagtgattggtttccgctttg 60
Query: 61 ttcacagtggctaagttctgcacctgaagagaagg 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcacagtggctaagttctgcacctgaagagaagg 95
>28384_hsa-mir-27b:mirbase
Length = 97
Score = 141 bits (71), Expect = 1e-34
Identities = 89/95 (93%)
Strand = Plus / Plus
Query: 1 acctctctgacaaggtgcagagcttagccgattggtgaacagtcactgatttcctctttg 60
|||||||| ||||||||||||||||||| |||||||||||||| | || ||||| |||||
Sbjct: 1 acctctctaacaaggtgcagagcttagctgattggtgaacagtgattggtttccgctttg 60
Query: 61 ttcacagtggctaagttctgcacctgaagagaagg 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcacagtggctaagttctgcacctgaagagaagg 95
>30775_ppy-mir-27b:mirbase
Length = 97
Score = 141 bits (71), Expect = 1e-34
Identities = 89/95 (93%)
Strand = Plus / Plus
Query: 1 acctctctgacaaggtgcagagcttagccgattggtgaacagtcactgatttcctctttg 60
|||||||| ||||||||||||||||||| |||||||||||||| | || ||||| |||||
Sbjct: 1 acctctctaacaaggtgcagagcttagctgattggtgaacagtgattggtttccgctttg 60
Query: 61 ttcacagtggctaagttctgcacctgaagagaagg 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcacagtggctaagttctgcacctgaagagaagg 95
>32681_rno-mir-27b:mirbase
Length = 97
Score = 141 bits (71), Expect = 1e-34
Identities = 89/95 (93%)
Strand = Plus / Plus
Query: 1 acctctctgacaaggtgcagagcttagccgattggtgaacagtcactgatttcctctttg 60
|||||||| ||||||||||||||||||| |||||||||||||| | || ||||| |||||
Sbjct: 1 acctctctaacaaggtgcagagcttagctgattggtgaacagtgattggtttccgctttg 60
Query: 61 ttcacagtggctaagttctgcacctgaagagaagg 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcacagtggctaagttctgcacctgaagagaagg 95
>30170_ptr-mir-27b:mirbase
Length = 96
Score = 139 bits (70), Expect = 4e-34
Identities = 88/94 (93%)
Strand = Plus / Plus
Query: 2 cctctctgacaaggtgcagagcttagccgattggtgaacagtcactgatttcctctttgt 61
||||||| ||||||||||||||||||| |||||||||||||| | || ||||| ||||||
Sbjct: 1 cctctctaacaaggtgcagagcttagctgattggtgaacagtgattggtttccgctttgt 60
Query: 62 tcacagtggctaagttctgcacctgaagagaagg 95
||||||||||||||||||||||||||||||||||
Sbjct: 61 tcacagtggctaagttctgcacctgaagagaagg 94
>25724_xtr-mir-27b:mirbase
Length = 96
Score = 131 bits (66), Expect = 1e-31
Identities = 78/82 (95%)
Strand = Plus / Plus
Query: 11 caaggtgcagagcttagccgattggtgaacagtcactgatttcctctttgttcacagtgg 70
|||||||||||||||||| |||||||||||||| | ||||| ||||||||||||||||||
Sbjct: 11 caaggtgcagagcttagctgattggtgaacagtgattgattccctctttgttcacagtgg 70
Query: 71 ctaagttctgcacctgaagaga 92
||||||||||||||||||||||
Sbjct: 71 ctaagttctgcacctgaagaga 92
>26416_tgu-mir-27:mirbase
Length = 91
Score = 129 bits (65), Expect = 4e-31
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 3 ctctctgacaaggtgcagagcttagccgattggtgaacagtcactgatttcctctttgtt 62
||||||| | |||||||||||||||| |||||||||||||| | || |||||||||||||
Sbjct: 3 ctctctggcgaggtgcagagcttagctgattggtgaacagtgattgttttcctctttgtt 62
Query: 63 cacagtggctaagttctgcacctgaagag 91
|||||||||||||||||||||||||||||
Sbjct: 63 cacagtggctaagttctgcacctgaagag 91
>25910_gga-mir-27b:mirbase
Length = 97
Score = 125 bits (63), Expect = 6e-30
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 13 aggtgcagagcttagccgattggtgaacagtcactgatttcctctttgttcacagtggct 72
|||||||||||||||| |||||||||||||| | || || ||||||||||||||||||||
Sbjct: 13 aggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggct 72
Query: 73 aagttctgcacctgaagagaagg 95
|||||||||||||||||||||||
Sbjct: 73 aagttctgcacctgaagagaagg 95
>33932_ssc-mir-27b:mirbase
Length = 80
Score = 121 bits (61), Expect = 1e-28
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 13 aggtgcagagcttagccgattggtgaacagtcactgatttcctctttgttcacagtggct 72
|||||||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||
Sbjct: 4 aggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggct 63
Query: 73 aagttctgcacctgaag 89
|||||||||||||||||
Sbjct: 64 aagttctgcacctgaag 80
>26967_eca-mir-27b:mirbase
Length = 73
Score = 113 bits (57), Expect = 2e-26
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 13 aggtgcagagcttagccgattggtgaacagtcactgatttcctctttgttcacagtggct 72
|||||||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||
Sbjct: 1 aggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggct 60
Query: 73 aagttctgcacct 85
|||||||||||||
Sbjct: 61 aagttctgcacct 73
>34566_fru-mir-27b:mirbase
Length = 74
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 18 cagagcttagccgattggtgaacagtcactgatttcctctttgttcacagtggctaagtt 77
||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 6 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65
Query: 78 ctgcacctg 86
|||||||||
Sbjct: 66 ctgcacctg 74
>34713_tni-mir-27b:mirbase
Length = 74
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 18 cagagcttagccgattggtgaacagtcactgatttcctctttgttcacagtggctaagtt 77
||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 6 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65
Query: 78 ctgcacctg 86
|||||||||
Sbjct: 66 ctgcacctg 74
>31798_mmu-mir-27b:mirbase
Length = 73
Score = 105 bits (53), Expect = 6e-24
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 13 aggtgcagagcttagccgattggtgaacagtcactgatttcctctttgttcacagtggct 72
|||||||||||||||| |||||||||||||| | || ||||| |||||||||||||||||
Sbjct: 1 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 60
Query: 73 aagttctgcacct 85
|||||||||||||
Sbjct: 61 aagttctgcacct 73
>26646_cfa-mir-27b:mirbase
Length = 63
Score = 93.7 bits (47), Expect = 2e-20
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 19 agagcttagccgattggtgaacagtcactgatttcctctttgttcacagtggctaagttc 78
|||||||||| |||||||||||||| |||| ||||| |||||||||||||||||||||||
Sbjct: 1 agagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggctaagttc 60
Query: 79 tgc 81
|||
Sbjct: 61 tgc 63
>34238_dre-mir-27b:mirbase
Length = 91
Score = 83.8 bits (42), Expect = 2e-17
Identities = 71/80 (88%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 13 aggtgcagagcttagccgattggtgaacagtcactgatttcctctttgttcacagtggct 72
|||||||||||||||| |||||||||||||| | ||| |||||||||||||||||||
Sbjct: 12 aggtgcagagcttagctgattggtgaacagtgattgaa---ctctttgttcacagtggct 68
Query: 73 aagttctgcacctgaagaga 92
|||||||||| |||| ||||
Sbjct: 69 aagttctgcatctgaggaga 88
>31445_oan-mir-27b:mirbase
Length = 117
Score = 81.8 bits (41), Expect = 8e-17
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 17 gcagagcttagccgattggtgaacagtcactgatttcctctttgttcacagtggctaagt 76
|||||||||||| |||||||||||||| | || | |||||||||||||||||||||||
Sbjct: 28 gcagagcttagctgattggtgaacagtgattgctggactctttgttcacagtggctaagt 87
Query: 77 tctgcacctgaagagaagggg 97
||||| || | ||||||||||
Sbjct: 88 tctgcgcccgcagagaagggg 108
>34240_dre-mir-27d:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 57 tttgttcacagtggctaagttctgcacctgaagagaa 93
||||||||||||||||||||||| |||| ||| ||||
Sbjct: 53 tttgttcacagtggctaagttcttcacccgaaaagaa 89
>25450_pma-mir-27b:mirbase
Length = 75
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttctgca 82
||||||||||||||||||||||||
Sbjct: 47 tgttcacagtggctaagttctgca 70
>25449_pma-mir-27a:mirbase
Length = 75
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 ttgttcacagtggctaagttc 78
|||||||||||||||||||||
Sbjct: 47 ttgttcacagtggctaagttc 67
>34568_fru-mir-27e:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 ttgttcacagtggctaagttc 78
|||||||||||||||||||||
Sbjct: 57 ttgttcacagtggctaagttc 77
>34715_tni-mir-27e:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 ttgttcacagtggctaagttc 78
|||||||||||||||||||||
Sbjct: 57 ttgttcacagtggctaagttc 77
>25723_xtr-mir-27a:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>25725_xtr-mir-27c-1:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>25726_xtr-mir-27c-2:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>26645_cfa-mir-27a:mirbase
Length = 60
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 39 tgttcacagtggctaagttc 58
>26966_eca-mir-27a:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>27351_mdo-mir-27a:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttc 73
>27491_age-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>27599_sla-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>27673_mml-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>28187_mne-mir-27a:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>28273_ggo-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>28383_hsa-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>30060_ppa-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>30169_ptr-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>30774_ppy-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>31404_lca-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>31444_oan-mir-27a:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 51 tgttcacagtggctaagttc 70
>31797_mmu-mir-27a:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttc 73
>32680_rno-mir-27a:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttc 73
>33154_bta-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>33155_bta-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>33931_ssc-mir-27a:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>34237_dre-mir-27a:mirbase
Length = 131
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 77 tgttcacagtggctaagttc 96
>34241_dre-mir-27e:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 63 tgttcacagtggctaagttc 82
