miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABIM01001714.1/11958-11721 3649:Carica papaya
(papaya)
Length = 238
Score = 115 bits (58), Expect = 3e-25
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 162 atgcatggtgtgggagcaactccttccacatactttgcccacccattggactgaagggag 221
|||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 162 atgcatggagtgggagcaactccttccccatactttgcccgcccattggactgaagggag 221
Query: 222 ctcctggttt 231
||||||||||
Sbjct: 222 ctcctggttt 231
Score = 77.8 bits (39), Expect = 6e-14
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 10 aggagctcctttcagtccaatacagggggcagagatgtggatagagctgccatctcatgc 69
||||||||||||||| ||||||| | || | ||||||||| |||||||||||||||||||
Sbjct: 11 aggagctcctttcagcccaatacggaggactgagatgtgggtagagctgccatctcatgc 70
Query: 70 attgggttatgctta 84
|| || ||||||||
Sbjct: 71 ataaggctatgctta 85
>RF00638;MIR159;AARH01009083.1/25466-25273 3694:Populus trichocarpa
Length = 194
Score = 97.6 bits (49), Expect = 7e-20
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 163 tgcatggtgtgggagcaactccttccacatactttgcccacccattggactgaagggagc 222
|||||||||||||||||||||||||| ||| ||||| | ||||||||||||||||||||
Sbjct: 119 tgcatggtgtgggagcaactccttccgcatgctttgttcgcccattggactgaagggagc 178
Query: 223 tcctggttt 231
|||||||||
Sbjct: 179 tcctggttt 187
Score = 60.0 bits (30), Expect = 1e-08
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 3 ggggctaaggagctcctttcagtccaatacagggggcagagatgtggatagagctgccat 62
|||||||| | |||||||| ||||||||| | |||| |||| | || ||||||||||||
Sbjct: 4 ggggctaaagtgctccttttagtccaataaggagggctgagaagcggctagagctgccat 63
Query: 63 ctcatgcatt 72
||||||||||
Sbjct: 64 ctcatgcatt 73
>RF00638;MIR159;EU526570.1/508-238 49390:Coffea canephora
Length = 271
Score = 79.8 bits (40), Expect = 2e-14
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 162 atgcatggtgtgggagcaactccttccacatactttgcccacccattggactgaagggag 221
|||||||||||||||||||||||| | | ||||||||| |||||||||||||||||||
Sbjct: 195 atgcatggtgtgggagcaactcctgtcgctcactttgcccgcccattggactgaagggag 254
Query: 222 ctcc 225
||||
Sbjct: 255 ctcc 258
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 51 tagagctgccatctcatgcattgggttatgctta 84
|||||||||||||||||||||| |||||||||||
Sbjct: 52 tagagctgccatctcatgcattcggttatgctta 85
>RF00638;MIR159;AASG02006722.1/5300-5498 3988:Ricinus communis
(castor bean)
Length = 199
Score = 73.8 bits (37), Expect = 1e-12
Identities = 58/64 (90%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 163 tgcatggtgtgggagcaactccttccacatactttgcccacccattggactgaagggagc 222
|||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct: 126 tgcatggtgtgggagcaactccttccc--tccttcccccacccattggactgaagggagc 183
Query: 223 tcct 226
||||
Sbjct: 184 tcct 187
Score = 50.1 bits (25), Expect = 1e-05
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 9 aaggagctcctttcagtccaatacagggggcagagatgtgg-atagagctgccatctcat 67
||||||||||||||||||||||| | |||| ||| | || | ||||||||||||||||
Sbjct: 10 aaggagctcctttcagtccaatatggagggcttagaagcggcaaagagctgccatctcat 69
Query: 68 gcatt 72
|||||
Sbjct: 70 gcatt 74
>RF00638;MIR159;AM434575.1/6317-6094 29760:Vitis vinifera
Length = 224
Score = 69.9 bits (35), Expect = 2e-11
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 151 agtttagcccgatgcatggtgtgggagcaactccttccacatactttgcccacccattgg 210
||||||||| |||||||| |||||||||||||| || || |||||||||| ||||||
Sbjct: 138 agtttagcctgatgcatgacatgggagcaactcct-ccgcacgctttgcccactcattgg 196
Query: 211 actgaagggagctcc 225
|||||||||||||||
Sbjct: 197 actgaagggagctcc 211
Score = 50.1 bits (25), Expect = 1e-05
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 12 gagctcctttcagtccaatacagggggcagagatgtggatagagctgccatctcatgcat 71
|||||||||| ||||||||| || |||| ||| | || |||||||||||||||||||
Sbjct: 13 gagctccttttagtccaataaagagggctgaggggcggccagagctgccatctcatgcac 72
Query: 72 tgggttatgctta 84
| || ||||||||
Sbjct: 73 ttggctatgctta 85
>RF00638;MIR159;BABK01007609.1/868-644 34305:Lotus japonicus
Length = 225
Score = 46.1 bits (23), Expect = 2e-04
Identities = 54/63 (85%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 163 tgcatggtgtgggagcaactccttccacatactttgcccacccattggactgaagggagc 222
||||||| |||||||||||||| || | | ||| ||||| |||||||| ||||||||||
Sbjct: 151 tgcatggcgtgggagcaactcca-ccgcctgcttagcccagccattggattgaagggagc 209
Query: 223 tcc 225
|||
Sbjct: 210 tcc 212
