miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 93.7 bits (47), Expect = 9e-19
Identities = 47/47 (100%)
Strand = Plus / Minus
Query: 144 accgtgcatttgcatgtgaatcttgatgatgctacacccgcaaacaa 190
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 accgtgcatttgcatgtgaatcttgatgatgctacacccgcaaacaa 1
Score = 67.9 bits (34), Expect = 5e-11
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 22 tttattgccgatgcagcatcatcaagattctcactttc 59
|||||||| |||||||||||||||||||||||||||||
Sbjct: 159 tttattgctgatgcagcatcatcaagattctcactttc 122
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 85.7 bits (43), Expect = 2e-16
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 140 caccaccgtgcatttgcatgtgaatcttgatgatgctacacccgcaaacaa 190
|||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 51 caccaccgtgcatttgcatgtgaatcttgatgatgctacatgcgcaaacaa 1
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 22 tttattgccgatgcagcatcatcaagattctca 54
|||||||||||||||||||||||||||||||||
Sbjct: 112 tttattgccgatgcagcatcatcaagattctca 80
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 83.8 bits (42), Expect = 9e-16
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 145 ccgtgcatttgcatgtgaatcttgatgatgctacacccgcaaacaa 190
|||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 46 ccgtgcatttgcatgtgaatcttgatgatgctccacccgcaaacaa 1
Score = 81.8 bits (41), Expect = 4e-15
Identities = 51/53 (96%), Gaps = 1/53 (1%)
Strand = Plus / Minus
Query: 22 tttattgccgatgcagcatcatcaagattctcactttccaaacaactttggca 74
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 141 tttattgccgatgcagcatcatcaagattctcac-ttccaaagaactttggca 90
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 81.8 bits (41), Expect = 4e-15
Identities = 51/53 (96%), Gaps = 1/53 (1%)
Strand = Plus / Minus
Query: 22 tttattgccgatgcagcatcatcaagattctcactttccaaacaactttggca 74
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 162 tttattgccgatgcagcatcatcaagattctcac-ttccaaagaactttggca 111
Score = 61.9 bits (31), Expect = 3e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 148 tgcatttgcatgtgaatcttgatgatgctacacccgcaaacaa 190
||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 43 tgcatttgcatgtgaatcttggtgatgcagcacccgcaaacaa 1
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 69.9 bits (35), Expect = 1e-11
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 152 tttgcatgtgaatcttgatgatgctacacccgcaaacaa 190
|||||||||||||||||||||||||||||| ||||||||
Sbjct: 39 tttgcatgtgaatcttgatgatgctacacctgcaaacaa 1
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 24 tattgccgatgcagcatcatcaagattctca 54
|||||||||||||||||||||||||||||||
Sbjct: 119 tattgccgatgcagcatcatcaagattctca 89
>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
(papaya)
Length = 213
Score = 67.9 bits (34), Expect = 5e-11
Identities = 47/50 (94%), Gaps = 1/50 (2%)
Strand = Plus / Minus
Query: 139 ccaccaccgt-gcatttgcatgtgaatcttgatgatgctacacccgcaaa 187
|||||||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct: 53 ccaccaccgttggatttgcatgtgaatcttgatgatgctacacccacaaa 4
Score = 60.0 bits (30), Expect = 1e-08
Identities = 46/50 (92%), Gaps = 1/50 (2%)
Strand = Plus / Minus
Query: 24 tattgccgatgcagcatcatcaagattctcactttccaaacaactttggc 73
||||| ||||||||||||||||||||||||||| | |||| |||||||||
Sbjct: 211 tattgtcgatgcagcatcatcaagattctcactct-caaagaactttggc 163
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 63.9 bits (32), Expect = 8e-10
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 155 gcatgtgaatcttgatgatgctacacccgcaaacaa 190
||||||||||||||||||||||||||| ||||||||
Sbjct: 36 gcatgtgaatcttgatgatgctacacctgcaaacaa 1
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 24 tattgccgatgcagcatcatcaagattctca 54
|||||||||||||||||||||||||||||||
Sbjct: 118 tattgccgatgcagcatcatcaagattctca 88
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 61.9 bits (31), Expect = 3e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 25 attgccgatgcagcatcatcaagattctcactttc 59
|||||||||||||||||||||||||||||| ||||
Sbjct: 113 attgccgatgcagcatcatcaagattctcattttc 79
>RF00452;mir-172;BABK01027900.1/1116-1276 34305:Lotus japonicus
Length = 161
Score = 61.9 bits (31), Expect = 3e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 148 tgcatttgcatgtgaatcttgatgatgctacacccgcaaacaa 190
|||||||||||||||||||||||| ||||||| | ||||||||
Sbjct: 43 tgcatttgcatgtgaatcttgatggtgctacatcagcaaacaa 1
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 22 tttattgccgatgcagcatcatcaagattctcactt 57
||||| ||| ||||||||||||||||||||||||||
Sbjct: 161 tttatggccaatgcagcatcatcaagattctcactt 126
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 22 tttattgccgatgcagcatcatcaagattctcactttc 59
||||| ||||||||||||||||||||||||||| ||||
Sbjct: 173 tttatggccgatgcagcatcatcaagattctcattttc 136
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 58.0 bits (29), Expect = 5e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 22 tttattgccgatgcagcatcatcaagattctca 54
|||||||| ||||||||||||||||||||||||
Sbjct: 90 tttattgctgatgcagcatcatcaagattctca 58
>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
trichocarpa
Length = 130
Score = 56.0 bits (28), Expect = 2e-07
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 151 atttgcatgtgaatcttgatgatgctacacccgcaaacaa 190
||||| |||||||||||||||||||| |||| ||||||||
Sbjct: 40 atttgaatgtgaatcttgatgatgctgcacctgcaaacaa 1
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 22 tttattgccgatgcagcatcatcaagattctcac 55
||||| || |||||||||||||||||||||||||
Sbjct: 130 tttatggctgatgcagcatcatcaagattctcac 97
>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
trichocarpa
Length = 129
Score = 54.0 bits (27), Expect = 8e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 152 tttgcatgtgaatcttgatgatgctacacccgcaaacaa 190
|||| |||||||||||||||||||| |||| ||||||||
Sbjct: 39 tttgaatgtgaatcttgatgatgctgcacctgcaaacaa 1
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 22 tttattgccgatgcagcatcatcaagattctcac 55
||||| || |||||||||||||||||||||||||
Sbjct: 129 tttatggctgatgcagcatcatcaagattctcac 96
>RF00452;mir-172;AASG02049897.1/697-856 3988:Ricinus communis
(castor bean)
Length = 160
Score = 54.0 bits (27), Expect = 8e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 152 tttgcatgtgaatcttgatgatgctacacccgcaaacaa 190
||||||||||||||||| ||||||| |||| ||||||||
Sbjct: 39 tttgcatgtgaatcttggtgatgctgcacctgcaaacaa 1
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 31 gatgcagcatcatcaagattctcac 55
|||||||||||||||||||||||||
Sbjct: 151 gatgcagcatcatcaagattctcac 127
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya (papaya)
Length = 201
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 22 tttattgccgatgcagcatcatcaagattc 51
|||||||||| |||||||||||||||||||
Sbjct: 201 tttattgccgctgcagcatcatcaagattc 172
Score = 48.1 bits (24), Expect = 5e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 158 tgtgaatcttgatgatgctacacccgcaaaca 189
||||||||||||||||||| || |||||||||
Sbjct: 33 tgtgaatcttgatgatgctccatccgcaaaca 2
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 25 attgccgatgcagcatcatcaagattctca 54
||||||| ||||||||||||||||||||||
Sbjct: 110 attgccgctgcagcatcatcaagattctca 81
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 22 tttattgccgatgcagcatcatcaagattc 51
|||||||||| |||||||||||||||||||
Sbjct: 144 tttattgccgctgcagcatcatcaagattc 115
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 26 ttgccgatgcagcatcatcaagattc 51
||||||||||||||||||||||||||
Sbjct: 130 ttgccgatgcagcatcatcaagattc 105
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
Length = 183
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 26 ttgccgatgcagcatcatcaagattc 51
||||||||||||||||||||||||||
Sbjct: 179 ttgccgatgcagcatcatcaagattc 154
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 22 tttattgccgatgcagcatcatcaagattc 51
|||||||||| |||||||||||||||||||
Sbjct: 156 tttattgccgctgcagcatcatcaagattc 127
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 22 tttattgccgatgcagcatcatcaagattc 51
|||||||||| |||||||||||||||||||
Sbjct: 140 tttattgccgctgcagcatcatcaagattc 111
Score = 48.1 bits (24), Expect = 5e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 158 tgtgaatcttgatgatgctacacccgcaaaca 189
||||||||||||||||||| || |||||||||
Sbjct: 33 tgtgaatcttgatgatgctccatccgcaaaca 2
>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
(castor bean)
Length = 143
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 26 ttgccgatgcagcatcatcaagattctca 54
|||| ||||||||||||||||||||||||
Sbjct: 139 ttgctgatgcagcatcatcaagattctca 111
>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
Length = 127
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 158 tgtgaatcttgatgatgctacacccgcaaacaa 190
||||||||||||||||||| |||| ||||||||
Sbjct: 33 tgtgaatcttgatgatgctccaccagcaaacaa 1
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 33 tgcagcatcatcaagattctca 54
||||||||||||||||||||||
Sbjct: 121 tgcagcatcatcaagattctca 100
>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
Length = 168
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 26 ttgccgatgcagcatcatcaagattctca 54
|||| ||||||||||||||||||||||||
Sbjct: 164 ttgctgatgcagcatcatcaagattctca 136
>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 26 ttgccgatgcagcatcatcaagattctca 54
|||| ||||||||||||||||||||||||
Sbjct: 118 ttgctgatgcagcatcatcaagattctca 90
Score = 44.1 bits (22), Expect = 8e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 157 atgtgaatcttgatgatgctacacccgcaa 186
|||||||||||||||||||| |||| ||||
Sbjct: 34 atgtgaatcttgatgatgctgcacctgcaa 5
>RF00452;mir-172;AP006162.2/95640-95748 39947:Oryza sativa Japonica
Group
Length = 109
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 157 atgtgaatcttgatgatgctacacccgcaaaca 189
||||||||||||||||||| || ||||||||||
Sbjct: 34 atgtgaatcttgatgatgccacgcccgcaaaca 2
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 31 gatgcagcatcatcaagattctca 54
||||||||||||||||||||||||
Sbjct: 100 gatgcagcatcatcaagattctca 77
>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
Length = 112
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 26 ttgccgatgcagcatcatcaagattctca 54
|||| ||||||||||||||||||||||||
Sbjct: 108 ttgctgatgcagcatcatcaagattctca 80
>RF00452;mir-172;AC189388.2/19492-19378 51351:Brassica rapa subsp.
pekinensis
Length = 115
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 31 gatgcagcatcatcaagattctca 54
||||||||||||||||||||||||
Sbjct: 106 gatgcagcatcatcaagattctca 83
>RF00452;mir-172;FM163882.1/53-161 3702:Arabidopsis thaliana (thale
cress)
Length = 109
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 31 gatgcagcatcatcaagattctca 54
||||||||||||||||||||||||
Sbjct: 100 gatgcagcatcatcaagattctca 77
>RF00452;mir-172;EU945504.1/992-1139 4577:Zea mays
Length = 148
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 31 gatgcagcatcatcaagattctca 54
||||||||||||||||||||||||
Sbjct: 139 gatgcagcatcatcaagattctca 116
>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
(sorghum)
Length = 139
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 31 gatgcagcatcatcaagattctca 54
||||||||||||||||||||||||
Sbjct: 130 gatgcagcatcatcaagattctca 107
>RF00452;mir-172;ABXC01001026.1/165015-165125 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 48.1 bits (24), Expect = 5e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 158 tgtgaatcttgatgatgctacacccgcaaaca 189
|||||||||||||||||| || ||||||||||
Sbjct: 33 tgtgaatcttgatgatgccacgcccgcaaaca 2
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 31 gatgcagcatcatcaagattctca 54
||||||||||||||||||||||||
Sbjct: 102 gatgcagcatcatcaagattctca 79
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 26 ttgccgatgcagcatcatcaagattctcact 56
|||| ||||||||||||||||||||| ||||
Sbjct: 121 ttgctgatgcagcatcatcaagattcccact 91
>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
Length = 111
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 32 atgcagcatcatcaagattctca 54
|||||||||||||||||||||||
Sbjct: 101 atgcagcatcatcaagattctca 79
>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
Group
Length = 238
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 29 ccgatgcagcatcatcaagattc 51
|||||||||||||||||||||||
Sbjct: 231 ccgatgcagcatcatcaagattc 209
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 26 ttgccgatgcagcatcatcaagattc 51
|||| |||||||||||||||||||||
Sbjct: 93 ttgctgatgcagcatcatcaagattc 68
>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana (thale
cress)
Length = 123
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 33 tgcagcatcatcaagattctca 54
||||||||||||||||||||||
Sbjct: 112 tgcagcatcatcaagattctca 91
