miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25980_gga-mir-187:mirbase
Length = 86
Score = 145 bits (73), Expect = 5e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 1 attgtgagacctctggctacaacacaggacacgggagcttttctgaaccctcgtgtcttg 60
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 6 attgtgagacctccggctacaacacaggacatgggagcttttctgaaccctcgtgtcttg 65
Query: 61 tgttgcagccagaggggcaca 81
|||||||||||||||||||||
Sbjct: 66 tgttgcagccagaggggcaca 86
>26488_tgu-mir-187:mirbase
Length = 70
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 15 ggctacaacacaggacacgggagcttttctgaaccctcgtgtcttgtgttgcagccagag 74
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagccagag 64
Query: 75 gggcac 80
||||||
Sbjct: 65 gggcac 70
>31517_oan-mir-187:mirbase
Length = 79
Score = 117 bits (59), Expect = 1e-27
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 3 tgtgagacctctggctacaacacaggacacgggagcttttctgaaccctcgtgtcttgtg 62
||||||||||| |||||||||| ||||||| |||||||||| ||||||||||||||||||
Sbjct: 1 tgtgagacctccggctacaacagaggacacaggagcttttcagaaccctcgtgtcttgtg 60
Query: 63 ttgcagccagaggggcaca 81
||||||||||||| |||||
Sbjct: 61 ttgcagccagaggagcaca 79
>27778_mml-mir-187:mirbase
Length = 109
Score = 91.7 bits (46), Expect = 7e-20
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 3 tgtgagacctctggctacaacacaggacacgggagcttttctgaaccctcgtgtcttgtg 62
||||||||||| |||||||||||||||| |||| ||| ||||| |||||||||||||||
Sbjct: 23 tgtgagacctcgggctacaacacaggacccgggtgctgctctgacccctcgtgtcttgtg 82
Query: 63 ttgcagccagaggg 76
|||||||| |||||
Sbjct: 83 ttgcagccggaggg 96
>28226_mne-mir-187:mirbase
Length = 109
Score = 91.7 bits (46), Expect = 7e-20
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 3 tgtgagacctctggctacaacacaggacacgggagcttttctgaaccctcgtgtcttgtg 62
||||||||||| |||||||||||||||| |||| ||| ||||| |||||||||||||||
Sbjct: 23 tgtgagacctcgggctacaacacaggacccgggtgctgctctgacccctcgtgtcttgtg 82
Query: 63 ttgcagccagaggg 76
|||||||| |||||
Sbjct: 83 ttgcagccggaggg 96
>28319_ggo-mir-187:mirbase
Length = 109
Score = 91.7 bits (46), Expect = 7e-20
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 3 tgtgagacctctggctacaacacaggacacgggagcttttctgaaccctcgtgtcttgtg 62
||||||||||| |||||||||||||||| |||| ||| ||||| |||||||||||||||
Sbjct: 23 tgtgagacctcgggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtg 82
Query: 63 ttgcagccagaggg 76
|||||||| |||||
Sbjct: 83 ttgcagccggaggg 96
>28494_hsa-mir-187:mirbase
Length = 109
Score = 91.7 bits (46), Expect = 7e-20
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 3 tgtgagacctctggctacaacacaggacacgggagcttttctgaaccctcgtgtcttgtg 62
||||||||||| |||||||||||||||| |||| ||| ||||| |||||||||||||||
Sbjct: 23 tgtgagacctcgggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtg 82
Query: 63 ttgcagccagaggg 76
|||||||| |||||
Sbjct: 83 ttgcagccggaggg 96
>30108_ppa-mir-187:mirbase
Length = 109
Score = 91.7 bits (46), Expect = 7e-20
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 3 tgtgagacctctggctacaacacaggacacgggagcttttctgaaccctcgtgtcttgtg 62
||||||||||| |||||||||||||||| |||| ||| ||||| |||||||||||||||
Sbjct: 23 tgtgagacctcgggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtg 82
Query: 63 ttgcagccagaggg 76
|||||||| |||||
Sbjct: 83 ttgcagccggaggg 96
>30876_ppy-mir-187:mirbase
Length = 109
Score = 83.8 bits (42), Expect = 2e-17
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 3 tgtgagacctctggctacaacacaggacacgggagcttttctgaaccctcgtgtcttgtg 62
||||||||||| |||||||||| ||||| |||| ||| ||||| |||||||||||||||
Sbjct: 23 tgtgagacctcgggctacaacataggacccgggcgctgctctgacccctcgtgtcttgtg 82
Query: 63 ttgcagccagaggg 76
|||||||| |||||
Sbjct: 83 ttgcagccggaggg 96
>34017_ssc-mir-187:mirbase
Length = 78
Score = 79.8 bits (40), Expect = 3e-16
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 5 tgagacctctggctacaacacaggacacgggagcttttctgaaccctcgtgtcttgtgtt 64
||||||||| ||||||||||| |||| |||| ||| ||||| |||||||||||||||||
Sbjct: 1 tgagacctcgggctacaacacgggactcgggcgctgctctgacccctcgtgtcttgtgtt 60
Query: 65 gcagccagaggg 76
|||||| |||||
Sbjct: 61 gcagccggaggg 72
>32773_rno-mir-187:mirbase
Length = 104
Score = 77.8 bits (39), Expect = 1e-15
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 10 cctctggctacaacacaggacacgggagcttttctgaaccctcgtgtcttgtgttgcagc 69
|||| |||||||||||||||| |||| ||| ||||| ||||||||||||||||||||||
Sbjct: 25 cctcaggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagc 84
Query: 70 cagaggg 76
| |||||
Sbjct: 85 cggaggg 91
>33255_bta-mir-187:mirbase
Length = 109
Score = 75.8 bits (38), Expect = 4e-15
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 3 tgtgagacctctggctacaacacaggacacgggagcttttctgaaccctcgtgtcttgtg 62
||||||||||| ||||||||||| |||| |||| ||| || || |||||||||||||||
Sbjct: 23 tgtgagacctcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtg 82
Query: 63 ttgcagccagaggg 76
|||||||| |||||
Sbjct: 83 ttgcagccggaggg 96
>31903_mmu-mir-187:mirbase
Length = 61
Score = 71.9 bits (36), Expect = 7e-14
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 15 ggctacaacacaggacacgggagcttttctgaaccctcgtgtcttgtgttgcagcc 70
|||||||||||||||| |||| ||| ||||| |||||||||||||||||||||||
Sbjct: 4 ggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagcc 59
>25810_xtr-mir-187:mirbase
Length = 82
Score = 65.9 bits (33), Expect = 4e-12
Identities = 58/65 (89%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 9 acctctggctacaacacaggacacgggagcttttctg-aaccctcgtgtcttgtgttgca 67
|||| ||| |||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 7 acctttggttacaacacaggacatgggagcttacttggaaccctcgtgtcttgtgttgca 66
Query: 68 gccag 72
|||||
Sbjct: 67 gccag 71
>26742_cfa-mir-187:mirbase
Length = 68
Score = 60.0 bits (30), Expect = 2e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 15 ggctacaacacaggacacgggagcttttctgaaccctcgtgtcttgtgttgcagccagag 74
||||||||||| |||| |||| ||| || || ||||||||||||||||||||||| |||
Sbjct: 5 ggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagccggag 64
Query: 75 gg 76
||
Sbjct: 65 gg 66
>27067_eca-mir-187:mirbase
Length = 61
Score = 56.0 bits (28), Expect = 4e-09
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 15 ggctacaacacaggacacgggagcttttctgaaccctcgtgtcttgtgttgcagcc 70
||||||||||| |||| |||| ||| || || |||||||||||||||||||||||
Sbjct: 4 ggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagcc 59
>34337_dre-mir-187:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 ctcgtgtcttgtgttgcagccag 72
|||||||||||||||||||||||
Sbjct: 60 ctcgtgtcttgtgttgcagccag 82
>34617_fru-mir-187:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 ctcgtgtcttgtgttgcagccag 72
|||||||||||||||||||||||
Sbjct: 62 ctcgtgtcttgtgttgcagccag 84
>34764_tni-mir-187:mirbase
Length = 65
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 ctcgtgtcttgtgttgcagccag 72
|||||||||||||||||||||||
Sbjct: 40 ctcgtgtcttgtgttgcagccag 62
