miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00256;mir-196;AADN02000989.1/695-605 9031:Gallus gallus
(chicken)
Length = 91
Score = 123 bits (62), Expect = 4e-28
Identities = 80/86 (93%)
Strand = Plus / Plus
Query: 1 aactggtctgtgatttaggtagtttcctgttgttggggctccacctttctctcgacagca 60
||||| |||||| ||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 4 aactgctctgtggtttaggtagtttcatgttgttggggctccacctttctctctacagca 63
Query: 61 cgatactgccttcattacttcagttg 86
||| |||||||| |||||||||||||
Sbjct: 64 cgaaactgccttaattacttcagttg 89
>RF00256;mir-196;ABRQ01101197.1/2188-2097 9813:Procavia capensis
(cape rock hyrax)
Length = 92
Score = 113 bits (57), Expect = 4e-25
Identities = 82/88 (93%), Gaps = 3/88 (3%)
Strand = Plus / Plus
Query: 1 aactggtctgtgatttaggtagtttcctgttgttggggctccacctttctc--tcgacag 58
|||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 4 aactggtcggtgatttaggtagtttcctgttgttggga-tccacctttctctctcgacag 62
Query: 59 cacgatactgccttcattacttcagttg 86
||||| ||||||||||||||||||||||
Sbjct: 63 cacgacactgccttcattacttcagttg 90
>RF00256;mir-196;AAWZ01035904.1/53611-53705 28377:Anolis
carolinensis (green anole)
Length = 95
Score = 79.8 bits (40), Expect = 5e-15
Identities = 77/89 (86%), Gaps = 4/89 (4%)
Strand = Plus / Plus
Query: 1 aactggtctgtgatttaggtagtttcctgttgttggggct----ccacctttctctcgac 56
|||||||| ||||||||||||||||| ||||||||||||| | || | |||||||
Sbjct: 4 aactggtcggtgatttaggtagtttcatgttgttggggctatggctctctctttctcgac 63
Query: 57 agcacgatactgccttcattacttcagtt 85
||||||| |||||||||||||||||||||
Sbjct: 64 agcacgaaactgccttcattacttcagtt 92
>RF00256;mir-196;FJ497005.1/156594-156684 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 9 tgtgatttaggtagtttcctgttgttggggctcca 43
|||||||||||||||||| ||||||||||||||||
Sbjct: 12 tgtgatttaggtagtttcatgttgttggggctcca 46
>RF00256;mir-196;AC132195.4/6836-6926 31136:Polypterus bichir
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 9 tgtgatttaggtagtttcctgttgttggggctcca 43
|||||||||||||||||| ||||||||||||||||
Sbjct: 11 tgtgatttaggtagtttcatgttgttggggctcca 45
>RF00256;mir-196;AF224262.1/4259-4348 7792:Heterodontus francisci
(horn shark)
Length = 90
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 9 tgtgatttaggtagtttcctgttgttggggctc 41
|||||||||||||||||| ||||||||||||||
Sbjct: 12 tgtgatttaggtagtttcatgttgttggggctc 44
>RF00256;mir-196;AC149508.2/54375-54285 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 91
Score = 56.0 bits (28), Expect = 7e-08
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 9 tgtgatttaggtagtttcctgttgttggggctccacctttctctcgacagcacgatactg 68
|||| |||||||||||| |||||||||| | |||||||||||| ||| || || ||||
Sbjct: 12 tgtggtttaggtagttttatgttgttgggcattcacctttctctctacaacaagaaactg 71
Query: 69 ccttcattacttcagt 84
|||| ||||| |||||
Sbjct: 72 ccttaattacatcagt 87
>RF00256;mir-196;BX927395.18/57996-57904 7955:Danio rerio
(zebrafish)
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 3 ctggtctgtgatttaggtagtttcctgttgttggg 37
|||||||||||||||||||||||| |||||||||
Sbjct: 6 ctggtctgtgatttaggtagtttcaagttgttggg 40
>RF00256;mir-196;AADN02070198.1/2795-2886 9031:Gallus gallus
(chicken)
Length = 92
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 1 aactggtctgtgatttaggtagtttcctgttgttggg 37
||||| ||||||| |||||||||||| ||||||||||
Sbjct: 4 aactgctctgtgaattaggtagtttcatgttgttggg 40
>RF00256;mir-196;AAFR03029824.1/20829-20920 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 92
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcctgttgttggg 37
|||||||||||||||||||||||
Sbjct: 18 ttaggtagtttcctgttgttggg 40
>RF00256;mir-196;AADN02023992.1/310-221 9031:Gallus gallus
(chicken)
Length = 90
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 7 tctgtgatttaggtagtttcctgttgttggg 37
|||||| ||||||||||||| ||||||||||
Sbjct: 10 tctgtggtttaggtagtttcatgttgttggg 40
