miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25991_gga-mir-200a:mirbase
Length = 87
Score = 119 bits (60), Expect = 3e-28
Identities = 73/76 (96%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 4 cctctgtgggcatcttactagacagtgctggattt-ttggatgtactctaacactgtctg 62
||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||
Sbjct: 4 cctctgtgggcatcttactagacagtgctggatttcttggatctattctaacactgtctg 63
Query: 63 gtaacgatgtttaaag 78
||||||||||||||||
Sbjct: 64 gtaacgatgtttaaag 79
>26498_tgu-mir-200a:mirbase
Length = 93
Score = 103 bits (52), Expect = 2e-23
Identities = 71/76 (93%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 4 cctctgtgggcatcttactagacagtgctggattt-ttggatgtactctaacactgtctg 62
||||||||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct: 13 cctctgtgggcatcttactagacagtgctggatttgctgcctctactctaacactgtctg 72
Query: 63 gtaacgatgtttaaag 78
||||||||||||||||
Sbjct: 73 gtaacgatgtttaaag 88
>31528_oan-mir-200a:mirbase
Length = 114
Score = 99.6 bits (50), Expect = 3e-22
Identities = 66/70 (94%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 4 cctctgtgggcatcttactagacagtgctggatttttggatgtactctaacactgtctgg 63
|||| ||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||
Sbjct: 20 cctccgtgggcatcttactagacagtgctgga-tttgggatctactctaacactgtctgg 78
Query: 64 taacgatgtt 73
||||||||||
Sbjct: 79 taacgatgtt 88
>26759_cfa-mir-200a:mirbase
Length = 90
Score = 93.7 bits (47), Expect = 2e-20
Identities = 72/79 (91%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 1 gggcctctgtgggcatcttactagacagtgctggattt-ttggatgtactctaacactgt 59
||||||||||||||||||||| ||||||||||||||| |||| | |||||||||||||
Sbjct: 3 gggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacactgt 62
Query: 60 ctggtaacgatgtttaaag 78
|||||||||||||| ||||
Sbjct: 63 ctggtaacgatgttcaaag 81
>31923_mmu-mir-200a:mirbase
Length = 90
Score = 93.7 bits (47), Expect = 2e-20
Identities = 72/79 (91%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 1 gggcctctgtgggcatcttactagacagtgctggattt-ttggatgtactctaacactgt 59
||||||||||||||||||||| ||||||||||||||| |||| | |||||||||||||
Sbjct: 3 gggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacactgt 62
Query: 60 ctggtaacgatgtttaaag 78
|||||||||||||| ||||
Sbjct: 63 ctggtaacgatgttcaaag 81
>32788_rno-mir-200a:mirbase
Length = 89
Score = 93.7 bits (47), Expect = 2e-20
Identities = 72/79 (91%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 1 gggcctctgtgggcatcttactagacagtgctggattt-ttggatgtactctaacactgt 59
||||||||||||||||||||| ||||||||||||||| |||| | |||||||||||||
Sbjct: 3 gggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacactgt 62
Query: 60 ctggtaacgatgtttaaag 78
|||||||||||||| ||||
Sbjct: 63 ctggtaacgatgttcaaag 81
>33035_rno-mir-3548:mirbase
Length = 120
Score = 93.7 bits (47), Expect = 2e-20
Identities = 72/79 (91%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 1 gggcctctgtgggcatcttactagacagtgctggattt-ttggatgtactctaacactgt 59
||||||||||||||||||||| ||||||||||||||| |||| | |||||||||||||
Sbjct: 100 gggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacactgt 41
Query: 60 ctggtaacgatgtttaaag 78
|||||||||||||| ||||
Sbjct: 40 ctggtaacgatgttcaaag 22
>25820_xtr-mir-200a:mirbase
Length = 89
Score = 83.8 bits (42), Expect = 2e-17
Identities = 70/78 (89%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 4 cctctgtgggcatcttactagacagtgctggattt-ttggatgtactctaacactgtctg 62
||||| ||| ||||||||||||||||||||||||| || || | ||||||||||||||
Sbjct: 5 cctctatggacatcttactagacagtgctggatttattttatcttttctaacactgtctg 64
Query: 63 gtaacgatgtttaaagag 80
||||||||||||||||||
Sbjct: 65 gtaacgatgtttaaagag 82
>27087_eca-mir-200a:mirbase
Length = 90
Score = 77.8 bits (39), Expect = 1e-15
Identities = 70/79 (88%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 1 gggcctctgtgggcatcttactagacagtgctggattttt-ggatgtactctaacactgt 59
||||| ||||||||||||||| ||||||||||||||| | || | |||||||||||||
Sbjct: 3 gggcccctgtgggcatcttaccggacagtgctggatttctcggctcgactctaacactgt 62
Query: 60 ctggtaacgatgtttaaag 78
|||||||||||||| ||||
Sbjct: 63 ctggtaacgatgttcaaag 81
>33278_bta-mir-200a:mirbase
Length = 86
Score = 77.8 bits (39), Expect = 1e-15
Identities = 70/79 (88%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 1 gggcctctgtgggcatcttactagacagtgctggattttt-ggatgtactctaacactgt 59
|||||||||||| |||||||| ||||||||||||||| | || | |||||||||||||
Sbjct: 1 gggcctctgtggacatcttaccggacagtgctggatttctcggctcgactctaacactgt 60
Query: 60 ctggtaacgatgtttaaag 78
|||||||||||||| ||||
Sbjct: 61 ctggtaacgatgttcaaag 79
>27798_mml-mir-200a:mirbase
Length = 90
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 47 actctaacactgtctggtaacgatgtttaaag 78
||||||||||||||||||||||||||| ||||
Sbjct: 50 actctaacactgtctggtaacgatgttcaaag 81
>28518_hsa-mir-200a:mirbase
Length = 90
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 47 actctaacactgtctggtaacgatgtttaaag 78
||||||||||||||||||||||||||| ||||
Sbjct: 50 actctaacactgtctggtaacgatgttcaaag 81
>30279_ptr-mir-200a:mirbase
Length = 89
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 47 actctaacactgtctggtaacgatgtttaaag 78
||||||||||||||||||||||||||| ||||
Sbjct: 49 actctaacactgtctggtaacgatgttcaaag 80
>30897_ppy-mir-200a:mirbase
Length = 88
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 47 actctaacactgtctggtaacgatgtttaaag 78
||||||||||||||||||||||||||| ||||
Sbjct: 50 actctaacactgtctggtaacgatgttcaaag 81
>34355_dre-mir-200a:mirbase
Length = 86
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatgttt 74
||||||||||||||||||||||||||
Sbjct: 50 tctaacactgtctggtaacgatgttt 75
>34628_fru-mir-200a:mirbase
Length = 83
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatgttt 74
||||||||||||||||||||||||||
Sbjct: 48 tctaacactgtctggtaacgatgttt 73
>34775_tni-mir-200a:mirbase
Length = 62
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatgtt 73
|||||||||||||||||||||||||
Sbjct: 38 tctaacactgtctggtaacgatgtt 62
>34310_dre-mir-141:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatg 71
|||||||||||||||||||||||
Sbjct: 49 tctaacactgtctggtaacgatg 71
>24694_bfl-mir-200c:mirbase
Length = 95
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatg 71
|||||||||||||||||| ||||
Sbjct: 56 tctaacactgtctggtaatgatg 78
>24837_cin-mir-141:mirbase
Length = 75
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatg 71
|||||||||||||||||| ||||
Sbjct: 38 tctaacactgtctggtaaagatg 60
>25328_csa-mir-141:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatg 71
|||||||||||||||||| ||||
Sbjct: 46 tctaacactgtctggtaaagatg 68
>27389_mdo-mir-141:mirbase
Length = 64
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatg 71
|||||||||||||||||| ||||
Sbjct: 39 tctaacactgtctggtaaagatg 61
