miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;AADN02040853.1/32451-32527 9031:Gallus gallus
(chicken)
Length = 77
Score = 117 bits (59), Expect = 2e-26
Identities = 72/75 (96%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 5 ctctgtgggcatcttactagacagtgctggattt-ttggatgtactctaacactgtctgg 63
|||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||
Sbjct: 1 ctctgtgggcatcttactagacagtgctggatttcttggatctattctaacactgtctgg 60
Query: 64 taacgatgtttaaag 78
|||||||||||||||
Sbjct: 61 taacgatgtttaaag 75
>RF00241;mir-8;AAPN01278104.1/1392-1318 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 97.6 bits (49), Expect = 2e-20
Identities = 62/65 (95%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 9 gtgggcatcttactagacagtgctggatttttggatgtactctaacactgtctggtaacg 68
||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||
Sbjct: 5 gtgggcatcttactagacagtgctgga-tttgggatctactctaacactgtctggtaacg 63
Query: 69 atgtt 73
|||||
Sbjct: 64 atgtt 68
>RF00241;mir-8;AAGW01121226.1/219-144 9986:Oryctolagus cuniculus
(rabbit)
Length = 76
Score = 71.9 bits (36), Expect = 1e-12
Identities = 62/68 (91%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 5 ctctgtgggcatcttactagacagtgctggatttttgg-atgtactctaacactgtctgg 63
|||||||||||||||||| |||||||||||||| | || ||| ||||||||||||||||
Sbjct: 1 ctctgtgggcatcttactggacagtgctggattctcggcatg-gctctaacactgtctgg 59
Query: 64 taacgatg 71
||||||||
Sbjct: 60 taacgatg 67
>RF00241;mir-8;AANN01836629.1/1372-1445 9365:Erinaceus europaeus
(western European hedgehog)
Length = 74
Score = 69.9 bits (35), Expect = 5e-12
Identities = 65/74 (87%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 5 ctctgtgggcatcttactagacagtgctggatttttggatgtactctaacactgtctggt 64
||||||||||||||||| |||||||||||||||| | ||||||||||||||||||
Sbjct: 1 ctctgtgggcatcttaccggacagtgctggattttcgctc--actctaacactgtctggt 58
Query: 65 aacgatgtttaaag 78
||||||||| ||||
Sbjct: 59 aacgatgttcaaag 72
>RF00241;mir-8;ABRQ01306924.1/1769-1693 9813:Procavia capensis
(cape rock hyrax)
Length = 77
Score = 69.9 bits (35), Expect = 5e-12
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 5 ctctgtgggcatcttactagacagtgctggatttttg-gatgtactctaacactgtctgg 63
||||||||||||||||| ||||||||||||||| | | | |||||||||||||||||
Sbjct: 1 ctctgtgggcatcttaccggacagtgctggatttctcagctagactctaacactgtctgg 60
Query: 64 taacgatgtttaaag 78
|||||||||| ||||
Sbjct: 61 taacgatgttcaaag 75
>RF00241;mir-8;AAWZ01036826.1/12431-12507 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 69.9 bits (35), Expect = 5e-12
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 5 ctctgtgggcatcttactagacagtgctggatttttggatgt-actctaacactgtctgg 63
|||||||| |||||||||||||||||||||||| | | | | | |||||||||||||||
Sbjct: 1 ctctgtggacatcttactagacagtgctggattgtgtgctctgattctaacactgtctgg 60
Query: 64 taacgatgtttaaag 78
|||||||||| ||||
Sbjct: 61 taacgatgttcaaag 75
>RF00241;mir-8;AALT01163752.1/983-908 42254:Sorex araneus
(European shrew)
Length = 76
Score = 60.0 bits (30), Expect = 5e-09
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 5 ctctgtgggcatcttactagacagtgctggatttttggatgtactctaacactgtctggt 64
||||||| ||||||||| |||||||||||| || || | |||||||||||||||||
Sbjct: 1 ctctgtgagcatcttaccggacagtgctggacttacggcttggctctaacactgtctggt 60
Query: 65 aacgatgtttaaag 78
||||||||| ||||
Sbjct: 61 aacgatgttcaaag 74
>RF00241;mir-8;AAVX01056733.1/885-961 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 5 ctctgtgggcatcttactagacagtgctggatt 37
|||||||| ||||||||||||||||||||||||
Sbjct: 1 ctctgtggacatcttactagacagtgctggatt 33
>RF00241;mir-8;BAAE01261092.1/898-975 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 48 ctctaacactgtctggtaacgatgttt 74
|||||||||||||||||||||||||||
Sbjct: 46 ctctaacactgtctggtaacgatgttt 72
>RF00241;mir-8;CR925720.9/83600-83676 7955:Danio rerio (zebrafish)
Length = 77
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatgttt 74
||||||||||||||||||||||||||
Sbjct: 46 tctaacactgtctggtaacgatgttt 71
>RF00241;mir-8;AANH01002761.1/40227-40150 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatgttt 74
||||||||||||||||||||||||||
Sbjct: 47 tctaacactgtctggtaacgatgttt 72
>RF00241;mir-8;CU855953.4/78055-77979 7955:Danio rerio (zebrafish)
Length = 77
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatg 71
|||||||||||||||||||||||
Sbjct: 46 tctaacactgtctggtaacgatg 68
