miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34634_fru-mir-210:mirbase
Length = 98
Score = 58.0 bits (29), Expect = 1e-09
Identities = 61/69 (88%), Gaps = 7/69 (10%)
Strand = Plus / Plus
Query: 7 gcaggggagccactgactaacgcacattgcgctcag--gac----ccactgtgcgtgtga 60
||||| |||||||||||||||||||||||||| ||| ||| |||||||||||||||
Sbjct: 8 gcaggtgagccactgactaacgcacattgcgc-cagttgacagttccactgtgcgtgtga 66
Query: 61 cagcggcta 69
|||||||||
Sbjct: 67 cagcggcta 75
>26770_cfa-mir-210:mirbase
Length = 98
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 37 gctcaggacccactgtgcgtgtgacagcggct 68
|||| |||||||||||||||||||||||||||
Sbjct: 43 gctccggacccactgtgcgtgtgacagcggct 74
>31937_mmu-mir-210:mirbase
Length = 110
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 37 gctcaggacccactgtgcgtgtgacagcggct 68
|||| |||||||||||||||||||||||||||
Sbjct: 54 gctccggacccactgtgcgtgtgacagcggct 85
>32801_rno-mir-210:mirbase
Length = 110
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 37 gctcaggacccactgtgcgtgtgacagcggct 68
|||| |||||||||||||||||||||||||||
Sbjct: 54 gctccggacccactgtgcgtgtgacagcggct 85
>33068_rno-mir-3574:mirbase
Length = 118
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 37 gctcaggacccactgtgcgtgtgacagcggct 68
|||| |||||||||||||||||||||||||||
Sbjct: 63 gctccggacccactgtgcgtgtgacagcggct 32
>33287_bta-mir-210:mirbase
Length = 98
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 37 gctcaggacccactgtgcgtgtgacagcggct 68
|||| |||||||||||||||||||||||||||
Sbjct: 43 gctccggacccactgtgcgtgtgacagcggct 74
>34038_ssc-mir-210:mirbase
Length = 76
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 37 gctcaggacccactgtgcgtgtgacagcggct 68
|||| |||||||||||||||||||||||||||
Sbjct: 36 gctccggacccactgtgcgtgtgacagcggct 67
>25831_xtr-mir-210:mirbase
Length = 91
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 agccactgactaacgcacattgcgct 39
||||||||||||||||||||||||||
Sbjct: 15 agccactgactaacgcacattgcgct 40
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 ccactgtgcgtgtgacagcggcta 69
||||||||||||||||||||||||
Sbjct: 53 ccactgtgcgtgtgacagcggcta 76
>27806_mml-mir-210:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 43 gacccactgtgcgtgtgacagcggct 68
||||||||||||||||||||||||||
Sbjct: 60 gacccactgtgcgtgtgacagcggct 85
>28528_hsa-mir-210:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 43 gacccactgtgcgtgtgacagcggct 68
||||||||||||||||||||||||||
Sbjct: 60 gacccactgtgcgtgtgacagcggct 85
>30287_ptr-mir-210:mirbase
Length = 109
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 43 gacccactgtgcgtgtgacagcggct 68
||||||||||||||||||||||||||
Sbjct: 60 gacccactgtgcgtgtgacagcggct 85
>34366_dre-mir-210:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 agccactgactaacgcacattgcgc 38
|||||||||||||||||||||||||
Sbjct: 8 agccactgactaacgcacattgcgc 32
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 ccactgtgcgtgtgacagcggcta 69
||||||||||||||||||||||||
Sbjct: 45 ccactgtgcgtgtgacagcggcta 68
>34782_tni-mir-210:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 8 caggggagccactgactaacgcacattg 35
|||| |||||||||||||||||||||||
Sbjct: 1 caggtgagccactgactaacgcacattg 28
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 ccactgtgcgtgtgacagcggcta 69
||||||||||||||||||||||||
Sbjct: 44 ccactgtgcgtgtgacagcggcta 67
>24695_bfl-mir-210:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 49 ctgtgcgtgtgacagcggct 68
||||||||||||||||||||
Sbjct: 61 ctgtgcgtgtgacagcggct 80
>35374_ame-mir-210:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 52 tgtgcgtgtgacagcggcta 71
>35543_bmo-mir-210:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 57 tgtgcgtgtgacagcggcta 76
>36111_dan-mir-210:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 53 tgtgcgtgtgacagcggcta 72
>36189_der-mir-210:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 53 tgtgcgtgtgacagcggcta 72
>36278_dgr-mir-210:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 53 tgtgcgtgtgacagcggcta 72
>36399_dme-mir-210:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 54 tgtgcgtgtgacagcggcta 73
>36400_dme-mir-210:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 54 tgtgcgtgtgacagcggcta 73
>36787_dmo-mir-210:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 53 tgtgcgtgtgacagcggcta 72
>36863_dpe-mir-210:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 51 tgtgcgtgtgacagcggcta 70
>36940_dps-mir-210a:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 51 tgtgcgtgtgacagcggcta 70
>36941_dps-mir-210b:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 44 tgtgcgtgtgacagcggcta 25
>37149_dse-mir-210:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 53 tgtgcgtgtgacagcggcta 72
>37227_dsi-mir-210:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 53 tgtgcgtgtgacagcggcta 72
>37363_dvi-mir-210:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 51 tgtgcgtgtgacagcggcta 70
>37442_dwi-mir-210:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 53 tgtgcgtgtgacagcggcta 72
>37517_dya-mir-210:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 53 tgtgcgtgtgacagcggcta 72
>37564_lmi-mir-210:mirbase
Length = 62
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 42 tgtgcgtgtgacagcggcta 61
>37582_ngi-mir-210:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 52 tgtgcgtgtgacagcggcta 71
>37655_nvi-mir-210:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 52 tgtgcgtgtgacagcggcta 71
>37753_tca-mir-210:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 50 tgtgcgtgtgacagcggcta 69
>37754_tca-mir-210:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 50 tgtgcgtgtgacagcggcta 69
>25526_pma-mir-210:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggct 68
|||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggct 67
