miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26773_cfa-mir-214:mirbase
Length = 110
Score = 204 bits (103), Expect = 1e-53
Identities = 106/107 (99%)
Strand = Plus / Plus
Query: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgct 63
Query: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>31534_oan-mir-214:mirbase
Length = 118
Score = 204 bits (103), Expect = 1e-53
Identities = 106/107 (99%)
Strand = Plus / Plus
Query: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctct 63
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ctggctggacggagttgtcacgtgtctgcctgtctacacttgctgtgcagaacatcctct 65
Query: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 112
>33290_bta-mir-214:mirbase
Length = 110
Score = 204 bits (103), Expect = 1e-53
Identities = 106/107 (99%)
Strand = Plus / Plus
Query: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgct 63
Query: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>34039_ssc-mir-214:mirbase
Length = 110
Score = 204 bits (103), Expect = 1e-53
Identities = 106/107 (99%)
Strand = Plus / Plus
Query: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgct 63
Query: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>25833_xtr-mir-214:mirbase
Length = 107
Score = 202 bits (102), Expect = 4e-53
Identities = 105/106 (99%)
Strand = Plus / Plus
Query: 5 tggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctc 64
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tggctggaaggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctc 61
Query: 65 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 107
>27519_age-mir-214:mirbase
Length = 110
Score = 196 bits (99), Expect = 2e-51
Identities = 105/107 (98%)
Strand = Plus / Plus
Query: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctct 63
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4 ctggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgct 63
Query: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>27625_sla-mir-214:mirbase
Length = 110
Score = 196 bits (99), Expect = 2e-51
Identities = 105/107 (98%)
Strand = Plus / Plus
Query: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctct 63
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4 ctggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgct 63
Query: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>27809_mml-mir-214:mirbase
Length = 110
Score = 196 bits (99), Expect = 2e-51
Identities = 105/107 (98%)
Strand = Plus / Plus
Query: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctct 63
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4 ctggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgct 63
Query: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>28236_mne-mir-214:mirbase
Length = 110
Score = 196 bits (99), Expect = 2e-51
Identities = 105/107 (98%)
Strand = Plus / Plus
Query: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctct 63
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4 ctggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgct 63
Query: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>28330_ggo-mir-214:mirbase
Length = 110
Score = 196 bits (99), Expect = 2e-51
Identities = 105/107 (98%)
Strand = Plus / Plus
Query: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctct 63
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4 ctggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgct 63
Query: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>28531_hsa-mir-214:mirbase
Length = 110
Score = 196 bits (99), Expect = 2e-51
Identities = 105/107 (98%)
Strand = Plus / Plus
Query: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctct 63
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4 ctggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgct 63
Query: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>30118_ppa-mir-214:mirbase
Length = 110
Score = 196 bits (99), Expect = 2e-51
Identities = 105/107 (98%)
Strand = Plus / Plus
Query: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctct 63
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4 ctggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgct 63
Query: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>30289_ptr-mir-214:mirbase
Length = 110
Score = 196 bits (99), Expect = 2e-51
Identities = 105/107 (98%)
Strand = Plus / Plus
Query: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctct 63
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4 ctggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgct 63
Query: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>30907_ppy-mir-214:mirbase
Length = 110
Score = 196 bits (99), Expect = 2e-51
Identities = 105/107 (98%)
Strand = Plus / Plus
Query: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctct 63
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4 ctggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgct 63
Query: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>31941_mmu-mir-214:mirbase
Length = 110
Score = 196 bits (99), Expect = 2e-51
Identities = 105/107 (98%)
Strand = Plus / Plus
Query: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctct 63
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4 ctggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgct 63
Query: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>32804_rno-mir-214:mirbase
Length = 110
Score = 188 bits (95), Expect = 6e-49
Identities = 104/107 (97%)
Strand = Plus / Plus
Query: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctct 63
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4 ctggatggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgct 63
Query: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>33026_rno-mir-3120:mirbase
Length = 117
Score = 186 bits (94), Expect = 2e-48
Identities = 100/102 (98%)
Strand = Plus / Minus
Query: 9 tggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacct 68
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 113 tggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacct 54
Query: 69 gtacagcaggcacagacaggcagtcacatgacaacccagcct 110
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 gtacagcaggcacagacaggcagtcacatgacaacccagcct 12
>26509_tgu-mir-214:mirbase
Length = 92
Score = 174 bits (88), Expect = 9e-45
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 11 gacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgt 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgt 60
Query: 71 acagcaggcacagacaggcagtcacatgacaa 102
||||||||||||||||||||||| ||||||||
Sbjct: 61 acagcaggcacagacaggcagtcgcatgacaa 92
>29245_hsa-mir-3120:mirbase
Length = 81
Score = 153 bits (77), Expect = 3e-38
Identities = 80/81 (98%)
Strand = Plus / Minus
Query: 20 gtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggc 79
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 81 gtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggc 22
Query: 80 acagacaggcagtcacatgac 100
|||||||||||||||||||||
Sbjct: 21 acagacaggcagtcacatgac 1
>29246_hsa-mir-3120:mirbase
Length = 81
Score = 153 bits (77), Expect = 3e-38
Identities = 80/81 (98%)
Strand = Plus / Minus
Query: 20 gtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggc 79
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 81 gtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggc 22
Query: 80 acagacaggcagtcacatgac 100
|||||||||||||||||||||
Sbjct: 21 acagacaggcagtcacatgac 1
>26001_gga-mir-214:mirbase
Length = 110
Score = 141 bits (71), Expect = 1e-34
Identities = 98/107 (91%)
Strand = Plus / Plus
Query: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctct 63
||||||| ||||||||||||||||||| ||||||||||||||||| || ||||||| ||
Sbjct: 4 ctggctgttcggagttgtcatgtgtctgtctgtctacacttgctgtccataacatccact 63
Query: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
|||||||||||| || |||||||||||||||| ||||||||||||||
Sbjct: 64 cacctgtacagcgggaacagacaggcagtcacctgacaacccagcct 110
>27097_eca-mir-214:mirbase
Length = 65
Score = 121 bits (61), Expect = 1e-28
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 28 tctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggcacagacag 87
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 tctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagacag 60
Query: 88 gcagt 92
|||||
Sbjct: 61 gcagt 65
>34368_dre-mir-214:mirbase
Length = 100
Score = 99.6 bits (50), Expect = 4e-22
Identities = 63/66 (95%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 26 tgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggcacagac 85
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 18 tgtctgcctgtctacacttgctgtgcagaacttcct-gcacctgtacagcaggcacagac 76
Query: 86 aggcag 91
||||||
Sbjct: 77 aggcag 82
>34636_fru-mir-214:mirbase
Length = 99
Score = 81.8 bits (41), Expect = 1e-16
Identities = 62/68 (91%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 24 tgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggcacag 83
||||||||||||||||||||||||||||||| | || || ||||||||||||||||||
Sbjct: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
Query: 84 acaggcag 91
||||||||
Sbjct: 78 acaggcag 85
>34784_tni-mir-214:mirbase
Length = 88
Score = 81.8 bits (41), Expect = 1e-16
Identities = 62/68 (91%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 24 tgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggcacag 83
||||||||||||||||||||||||||||||| | || || ||||||||||||||||||
Sbjct: 5 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 62
Query: 84 acaggcag 91
||||||||
Sbjct: 63 acaggcag 70
