miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31547_oan-mir-302-2:mirbase
Length = 69
Score = 87.7 bits (44), Expect = 9e-19
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 4 cttctactttaacatggaggtactttctgtgtttaaaaaggtaagtgcttccatgttttg 63
||||||||||||||||||||| ||||||||| || |||| |||||||||||||||||||
Sbjct: 1 cttctactttaacatggaggtgctttctgtgatttaaaaagtaagtgcttccatgtttta 60
Query: 64 gtag 67
||||
Sbjct: 61 gtag 64
>26018_gga-mir-302b:mirbase
Length = 72
Score = 73.8 bits (37), Expect = 1e-14
Identities = 61/68 (89%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 2 cccttctactttaacatggaggtactttctgtg--tttaaaaaggtaagtgcttccatgt 59
||||| ||||||||||||||||| ||||||||| |||| ||| ||||||||||||||||
Sbjct: 1 cccttttactttaacatggaggtgctttctgtgattttacaaaagtaagtgcttccatgt 60
Query: 60 tttggtag 67
||| ||||
Sbjct: 61 tttagtag 68
>27832_mml-mir-302b:mirbase
Length = 76
Score = 67.9 bits (34), Expect = 9e-13
Identities = 65/73 (89%), Gaps = 3/73 (4%)
Strand = Plus / Plus
Query: 2 cccttctactttaacatggaggtactttctgtg--tttaaaa-aggtaagtgcttccatg 58
|||||| ||||||||||||| || ||||||||| ||||||| | |||||||||||||||
Sbjct: 4 cccttcaactttaacatggaagtgctttctgtgactttaaaataagtaagtgcttccatg 63
Query: 59 ttttggtaggagt 71
|||| ||||||||
Sbjct: 64 ttttagtaggagt 76
>28556_hsa-mir-302b:mirbase
Length = 73
Score = 67.9 bits (34), Expect = 9e-13
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 2 cccttctactttaacatggaggtactttctgtgtttaaaaaggtaagtgcttccatgttt 61
|||||| ||||||||||||| || ||||||||| | ||| ||||||||||||||||||
Sbjct: 4 cccttcaactttaacatggaagtgctttctgtgactttaaaagtaagtgcttccatgttt 63
Query: 62 tggtaggagt 71
| ||||||||
Sbjct: 64 tagtaggagt 73
>30928_ppy-mir-302b:mirbase
Length = 76
Score = 67.9 bits (34), Expect = 9e-13
Identities = 65/73 (89%), Gaps = 3/73 (4%)
Strand = Plus / Plus
Query: 2 cccttctactttaacatggaggtactttctgtg--tttaaaa-aggtaagtgcttccatg 58
|||||| ||||||||||||| || ||||||||| ||||||| | |||||||||||||||
Sbjct: 4 cccttcaactttaacatggaagtgctttctgtgactttaaaagaagtaagtgcttccatg 63
Query: 59 ttttggtaggagt 71
|||| ||||||||
Sbjct: 64 ttttagtaggagt 76
>30311_ptr-mir-302b:mirbase
Length = 72
Score = 65.9 bits (33), Expect = 3e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 2 cccttctactttaacatggaggtactttctgtgtttaaaaaggtaagtgcttccatgttt 61
|||||| ||||||||||||| || ||||||||| | ||| ||||||||||||||||||
Sbjct: 4 cccttcaactttaacatggaagtgctttctgtgactttaaaagtaagtgcttccatgttt 63
Query: 62 tggtaggag 70
| |||||||
Sbjct: 64 tagtaggag 72
>31985_mmu-mir-302d:mirbase
Length = 66
Score = 52.0 bits (26), Expect = 5e-08
Identities = 50/56 (89%), Gaps = 4/56 (7%)
Strand = Plus / Plus
Query: 8 tactttaacatggaggtactttctgtg--tttaaaaaggtaagtgcttccatgttt 61
|||||||||||||||| |||| ||||| |||||||| |||||||||||||||||
Sbjct: 5 tactttaacatggaggcacttgctgtgcatttaaaaa--taagtgcttccatgttt 58
>26791_cfa-mir-302b:mirbase
Length = 75
Score = 48.1 bits (24), Expect = 8e-07
Identities = 53/62 (85%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 9 actttaacatggaggtactttctgtg---tttaaaaaggtaagtgcttccatgttttggt 65
||||||||||||| ||||||||| || || |||| ||||||||||||||||||| ||
Sbjct: 10 actttaacatggaagtactttctttgactttcaaaatagtaagtgcttccatgttttagt 69
Query: 66 ag 67
||
Sbjct: 70 ag 71
>27118_eca-mir-302d:mirbase
Length = 68
Score = 48.1 bits (24), Expect = 8e-07
Identities = 51/59 (86%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 6 tctactttaacatggaggtactttctgtg--tttaaaaaggtaagtgcttccatgtttt 62
|||||||||||||||||| |||| ||||| || | ||| ||||||||||||||||||
Sbjct: 3 tctactttaacatggaggcacttgctgtgacttgagaaaaataagtgcttccatgtttt 61
>33311_bta-mir-302b:mirbase
Length = 75
Score = 48.1 bits (24), Expect = 8e-07
Identities = 53/62 (85%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 9 actttaacatggaggtactttctgtg---tttaaaaaggtaagtgcttccatgttttggt 65
|||||||||||| |||||||||||| ||| ||| ||||||||||||||||||| ||
Sbjct: 10 actttaacatggtagtactttctgtgacttttgaaatagtaagtgcttccatgttttagt 69
Query: 66 ag 67
||
Sbjct: 70 ag 71
>27441_mdo-mir-302d:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 3e-06
Identities = 47/54 (87%), Gaps = 2/54 (3%)
Strand = Plus / Plus
Query: 10 ctttaacatggaggtactttctgtg--tttaaaaaggtaagtgcttccatgttt 61
|||||||||||| || ||| ||||| |||||||| |||||||||||||||||
Sbjct: 7 ctttaacatggaagtgcttgctgtgattttaaaaaattaagtgcttccatgttt 60
>33313_bta-mir-302d:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 3e-06
Identities = 53/61 (86%), Gaps = 4/61 (6%)
Strand = Plus / Plus
Query: 6 tctactttaacatggaggtactttctgtg--tt--taaaaaggtaagtgcttccatgttt 61
|||||||||||||||||| |||| ||||| || |||||| |||||||||||||||||
Sbjct: 3 tctactttaacatggaggcacttgctgtgacttcataaaaaaataagtgcttccatgttt 62
Query: 62 t 62
|
Sbjct: 63 t 63
>27438_mdo-mir-302a:mirbase
Length = 70
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 37 taaaaaggtaagtgcttccatgtttt 62
|||||| |||||||||||||||||||
Sbjct: 37 taaaaaagtaagtgcttccatgtttt 62
>27831_mml-mir-302a:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 gtaagtgcttccatgttttggt 65
||||||||||||||||||||||
Sbjct: 43 gtaagtgcttccatgttttggt 64
>28555_hsa-mir-302a:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 gtaagtgcttccatgttttggt 65
||||||||||||||||||||||
Sbjct: 43 gtaagtgcttccatgttttggt 64
>30310_ptr-mir-302a:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 gtaagtgcttccatgttttggt 65
||||||||||||||||||||||
Sbjct: 43 gtaagtgcttccatgttttggt 64
>31982_mmu-mir-302a:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 gtaagtgcttccatgttttggt 65
||||||||||||||||||||||
Sbjct: 43 gtaagtgcttccatgttttggt 64
>33310_bta-mir-302a:mirbase
Length = 70
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 37 taaaaaggtaagtgcttccatgtttt 62
|||||| |||||||||||||||||||
Sbjct: 37 taaaaaagtaagtgcttccatgtttt 62
>26792_cfa-mir-302c:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 5e-05
Identities = 46/53 (86%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 10 ctttaacatggaggtactttctgtgtttaa-aaaggtaagtgcttccatgttt 61
||||||||||| ||||| | |||||| || ||| ||||||||||||||||||
Sbjct: 7 ctttaacatgggggtacctgctgtgtaaaacaaaagtaagtgcttccatgttt 59
>26793_cfa-mir-302d:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 6 tctactttaacatggaggtactttctgtg 34
|||||||||||||||||| |||| |||||
Sbjct: 3 tctactttaacatggaggcacttgctgtg 31
>27833_mml-mir-302c:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 5e-05
Identities = 46/53 (86%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 10 ctttaacatggaggtactttctgtgtttaa-aaaggtaagtgcttccatgttt 61
||||||||||| ||||| | |||||| || ||| ||||||||||||||||||
Sbjct: 7 ctttaacatgggggtacctgctgtgtgaaacaaaagtaagtgcttccatgttt 59
>27834_mml-mir-302d:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 6 tctactttaacatggaggtactttctgtg 34
|||||||||||||||||| |||| |||||
Sbjct: 3 tctactttaacatggaggcacttgctgtg 31
>28557_hsa-mir-302c:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 5e-05
Identities = 46/53 (86%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 10 ctttaacatggaggtactttctgtgtttaa-aaaggtaagtgcttccatgttt 61
||||||||||| ||||| | |||||| || ||| ||||||||||||||||||
Sbjct: 7 ctttaacatgggggtacctgctgtgtgaaacaaaagtaagtgcttccatgttt 59
>28558_hsa-mir-302d:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 6 tctactttaacatggaggtactttctgtg 34
|||||||||||||||||| |||| |||||
Sbjct: 3 tctactttaacatggaggcacttgctgtg 31
>30312_ptr-mir-302c:mirbase
Length = 67
Score = 42.1 bits (21), Expect = 5e-05
Identities = 46/53 (86%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 10 ctttaacatggaggtactttctgtgtttaa-aaaggtaagtgcttccatgttt 61
||||||||||| ||||| | |||||| || ||| ||||||||||||||||||
Sbjct: 7 ctttaacatgggggtacctgctgtgtgaaacaaaagtaagtgcttccatgttt 59
>30313_ptr-mir-302d:mirbase
Length = 67
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 6 tctactttaacatggaggtactttctgtg 34
|||||||||||||||||| |||| |||||
Sbjct: 3 tctactttaacatggaggcacttgctgtg 31
>30929_ppy-mir-302c:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 5e-05
Identities = 46/53 (86%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 10 ctttaacatggaggtactttctgtgtttaa-aaaggtaagtgcttccatgttt 61
||||||||||| ||||| | |||||| || ||| ||||||||||||||||||
Sbjct: 7 ctttaacatgggggtacctgctgtgtgaaacaaaagtaagtgcttccatgttt 59
>26020_gga-mir-302d:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 9 actttaacatggaggtactt 28
||||||||||||||||||||
Sbjct: 6 actttaacatggaggtactt 25
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 39 aaaaggtaagtgcttccatgtttt 62
|||| |||||||||||||||||||
Sbjct: 38 aaaaagtaagtgcttccatgtttt 61
>26790_cfa-mir-302a:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 39 aaaaggtaagtgcttccatgtttt 62
|||| |||||||||||||||||||
Sbjct: 38 aaaaagtaagtgcttccatgtttt 61
>27116_eca-mir-302b:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 44 gtaagtgcttccatgttttggtag 67
||||||||||||||||||| ||||
Sbjct: 49 gtaagtgcttccatgttttagtag 72
>31983_mmu-mir-302b:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 44 gtaagtgcttccatgttttggtag 67
||||||||||||||||||| ||||
Sbjct: 47 gtaagtgcttccatgttttagtag 70
>27115_eca-mir-302a:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 gtaagtgcttccatgtttt 62
|||||||||||||||||||
Sbjct: 43 gtaagtgcttccatgtttt 61
>27440_mdo-mir-302c:mirbase
Length = 59
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 39 aaaaggtaagtgcttccatgttt 61
|||| ||||||||||||||||||
Sbjct: 31 aaaaagtaagtgcttccatgttt 53
>31546_oan-mir-302-1:mirbase
Length = 126
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 gtaagtgcttccatgtttt 62
|||||||||||||||||||
Sbjct: 77 gtaagtgcttccatgtttt 95
