miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00668;mir-302;AAFR03016534.1/30106-30172 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 67
Score = 133 bits (67), Expect = 3e-31
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 4 cttctactttaacatggaggtactttctgtgtttaaaaaggtaagtgcttccatgttttg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttctactttaacatggaggtactttctgtgtttaaaaaggtaagtgcttccatgttttg 60
Query: 64 gtaggag 70
|||||||
Sbjct: 61 gtaggag 67
>RF00668;mir-302;AADN02009328.1/23605-23673 9031:Gallus gallus
(chicken)
Length = 69
Score = 69.9 bits (35), Expect = 4e-12
Identities = 56/62 (90%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 8 tactttaacatggaggtactttctgtg--tttaaaaaggtaagtgcttccatgttttggt 65
||||||||||||||||| ||||||||| |||| ||| ||||||||||||||||||| ||
Sbjct: 5 tactttaacatggaggtgctttctgtgattttacaaaagtaagtgcttccatgttttagt 64
Query: 66 ag 67
||
Sbjct: 65 ag 66
>RF00668;mir-302;AAPY01419152.1/185-114 37347:Tupaia belangeri
(northern tree shrew)
Length = 72
Score = 52.0 bits (26), Expect = 9e-07
Identities = 52/59 (88%), Gaps = 5/59 (8%)
Strand = Plus / Plus
Query: 9 actttaacatggaggtactttctgtg----tttaaaaag-gtaagtgcttccatgtttt 62
||||||||||||||||||| |||||| |||| |||| |||||||||||||||||||
Sbjct: 6 actttaacatggaggtactctctgtgcctttttagaaagagtaagtgcttccatgtttt 64
>RF00668;mir-302;AACN010299228.1/1232-1301 9615:Canis lupus
familiaris (dog)
Length = 70
Score = 48.1 bits (24), Expect = 1e-05
Identities = 53/62 (85%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 9 actttaacatggaggtactttctgtg---tttaaaaaggtaagtgcttccatgttttggt 65
||||||||||||| ||||||||| || || |||| ||||||||||||||||||| ||
Sbjct: 6 actttaacatggaagtactttctttgactttcaaaatagtaagtgcttccatgttttagt 65
Query: 66 ag 67
||
Sbjct: 66 ag 67
>RF00668;mir-302;AAFR03016534.1/30625-30693 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 69
Score = 46.1 bits (23), Expect = 6e-05
Identities = 47/54 (87%), Gaps = 2/54 (3%)
Strand = Plus / Plus
Query: 10 ctttaacatggaggtactttctgtg--tttaaaaaggtaagtgcttccatgttt 61
|||||||||||| || ||| ||||| |||||||| |||||||||||||||||
Sbjct: 7 ctttaacatggaagtgcttgctgtgattttaaaaaattaagtgcttccatgttt 60
>RF00668;mir-302;AAGW01417911.1/808-881 9986:Oryctolagus cuniculus
(rabbit)
Length = 74
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 4 cttctactttaacatggaggtactttctgtg 34
|||| |||||||||||||||| |||||||||
Sbjct: 1 cttcaactttaacatggaggtgctttctgtg 31
>RF00668;mir-302;ABRR01131093.1/749-681 30538:Lama pacos (alpaca)
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 37 taaaaaggtaagtgcttccatgtttt 62
|||||| |||||||||||||||||||
Sbjct: 36 taaaaaagtaagtgcttccatgtttt 61
>RF00668;mir-302;AAPY01684075.1/7919-7851 37347:Tupaia belangeri
(northern tree shrew)
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 gtaagtgcttccatgttttggt 65
||||||||||||||||||||||
Sbjct: 43 gtaagtgcttccatgttttggt 64
>RF00668;mir-302;ABRQ01753171.1/1212-1280 9813:Procavia capensis
(cape rock hyrax)
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 37 taaaaaggtaagtgcttccatgtttt 62
|||||| |||||||||||||||||||
Sbjct: 36 taaaaaagtaagtgcttccatgtttt 61
>RF00668;mir-302;ABRR01146281.1/7793-7724 30538:Lama pacos
(alpaca)
Length = 70
Score = 42.1 bits (21), Expect = 9e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 6 tctactttaacatggaggtactttctgtg 34
|||||||||||||||||| |||| |||||
Sbjct: 3 tctactttaacatggaggcacttgctgtg 31
>RF00668;mir-302;AAYZ01300380.1/1601-1528 9978:Ochotona princeps
(American pika)
Length = 74
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 aaaaaggtaagtgcttccatgtttt 62
||||| |||||||||||||||||||
Sbjct: 42 aaaaaagtaagtgcttccatgtttt 66
>RF00668;mir-302;AAGW01417911.1/1285-1352 9986:Oryctolagus
cuniculus (rabbit)
Length = 68
Score = 42.1 bits (21), Expect = 9e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 6 tctactttaacatggaggtactttctgtg 34
|||||||||||||||||| |||| |||||
Sbjct: 3 tctactttaacatggaggcacttgctgtg 31
>RF00668;mir-302;ABRQ01753171.1/1044-1111 9813:Procavia capensis
(cape rock hyrax)
Length = 68
Score = 42.1 bits (21), Expect = 9e-04
Identities = 46/53 (86%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 10 ctttaacatggaggtactttctgtgtttaa-aaaggtaagtgcttccatgttt 61
||||||||||| ||||| | |||||| || ||| ||||||||||||||||||
Sbjct: 7 ctttaacatgggggtacctgctgtgtaaaataaaagtaagtgcttccatgttt 59
