miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00659;mir-365;AADN02023913.1/98870-98778 9031:Gallus gallus
(chicken)
Length = 93
Score = 172 bits (87), Expect = 5e-43
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 ccgcagggaaaatgagggacttttgggggcagatgtgtttccattacactatcataatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ccgcagggaaaatgagggacttttgggggcagatgtgtttccattacactatcataatgc 61
Query: 61 ccctaaaaatccttattgctcttgcag 87
|||||||||||||||||||||||||||
Sbjct: 62 ccctaaaaatccttattgctcttgcag 88
>RF00659;mir-365;CU138533.13/80864-80956 7955:Danio rerio
(zebrafish)
Length = 93
Score = 107 bits (54), Expect = 2e-23
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 1 ccgcagggaaaatgagggacttttgggggcagatgtgtttccattacactatcataatgc 60
||||||||| |||||||| |||||||||||| |||||||| || ||| ||||||||||
Sbjct: 2 ccgcagggagaatgaggggcttttgggggcacttgtgtttcagtttcaccatcataatgc 61
Query: 61 ccctaaaaatccttattgctcttgca 86
||||||||||||||||||||||||||
Sbjct: 62 ccctaaaaatccttattgctcttgca 87
>RF00659;mir-365;BAAE01286148.1/272-364 8090:Oryzias latipes
(Japanese medaka)
Length = 93
Score = 83.8 bits (42), Expect = 3e-16
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 9 aaaatgagggacttttgggggcagatgtgtttccattacactatcataatgcccctaaaa 68
|||||||||||||||| ||||||| ||||||| | || | |||||||||||||||||
Sbjct: 10 aaaatgagggacttttaggggcagctgtgttttattaacccagtcataatgcccctaaaa 69
Query: 69 atccttattgctcttgca 86
||||||||||||||||||
Sbjct: 70 atccttattgctcttgca 87
>RF00659;mir-365;AAPE01619298.1/1229-1137 59463:Myotis lucifugus
(little brown bat)
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 52 tcataatgcccctaaaaatccttattgctcttgcag 87
||||||||||||||||||||||||||||||||||||
Sbjct: 53 tcataatgcccctaaaaatccttattgctcttgcag 88
>RF00659;mir-365;AAIY01424277.1/585-676 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 92
Score = 63.9 bits (32), Expect = 3e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 52 tcataatgcccctaaaaatccttattgctcttgcag 87
||||||||||||||||||||||||||| ||||||||
Sbjct: 52 tcataatgcccctaaaaatccttattgttcttgcag 87
>RF00659;mir-365;AAVX01240641.1/1189-1241 7868:Callorhinchus milii
(ghost shark)
Length = 53
Score = 46.1 bits (23), Expect = 7e-05
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 18 gacttttgggggcagatgtgtttccattacactatcataatgcccctaaaa 68
||||||||||||||| |||||||| | || ||||||||||||||||||
Sbjct: 1 gacttttgggggcaggtgtgtttcagctgcataatcataatgcccctaaaa 51
>RF00659;mir-365;AAVX01470594.1/166-258 7868:Callorhinchus milii
(ghost shark)
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 52 tcataatgcccctaaaaatccttattgctcttgca 86
||||||||||||||||||||| |||| ||| ||||
Sbjct: 53 tcataatgcccctaaaaatccctatttctcatgca 87
