miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26026_gga-mir-429:mirbase
Length = 84
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 1 gattggtgtcttaccagacaaagttagatctcgctatttctgtctaatactgtctggtaa 60
||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 8 gattgctgtcttaccaggcaaagttagatctagctatttctgtctaatactgtctggtaa 67
Query: 61 tgcc 64
||||
Sbjct: 68 tgcc 71
>31552_oan-mir-429:mirbase
Length = 112
Score = 95.6 bits (48), Expect = 4e-21
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 1 gattggtgtcttaccagacaaagttagatctcgctatttctgtctaatactgtctggtaa 60
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 20 gattggtgtcttaccagacaaagttagatctgactattttcgtctaatactgtctggtaa 79
Query: 61 tgcc 64
||||
Sbjct: 80 tgcc 83
>25860_xtr-mir-429:mirbase
Length = 87
Score = 67.9 bits (34), Expect = 9e-13
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 7 tgtcttaccagacaaagttagatctcgctatttctgtctaatactgtctggtaatgccat 66
||||||||||||||| ||||||||| | || | ||||||||||||||||||||||| |
Sbjct: 15 tgtcttaccagacaaggttagatctagttactctcgtctaatactgtctggtaatgccgt 74
Query: 67 tggtca 72
||||||
Sbjct: 75 tggtca 80
>32910_rno-mir-429:mirbase
Length = 85
Score = 67.9 bits (34), Expect = 9e-13
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 7 tgtcttaccagacaaagttagatctcgctatttctgtctaatactgtctggtaatgcc 64
|||||||||||||| ||||||||| | | | ||||||||||||||||||||||||||
Sbjct: 15 tgtcttaccagacatggttagatctggatgtatctgtctaatactgtctggtaatgcc 72
>25673_xla-mir-429:mirbase
Length = 68
Score = 60.0 bits (30), Expect = 2e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 7 tgtcttaccagacaaagttagatctcgctatttctgtctaatactgtctggtaatgcc 64
|||||||||||||| ||||||||| | | ||||||||||||||||||||||||||
Sbjct: 5 tgtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatgcc 62
>32069_mmu-mir-429:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 2e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 7 tgtcttaccagacaaagttagatctcgctatttctgtctaatactgtctggtaatgcc 64
|||||||||||||| ||||||||| | | ||||||||||||||||||||||||||
Sbjct: 13 tgtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatgcc 70
>27176_eca-mir-429:mirbase
Length = 67
Score = 58.0 bits (29), Expect = 8e-10
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 8 gtcttaccagacaaagttagatctcgctatttctgtctaatactgtctggtaatgcc 64
||||||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct: 5 gtcttaccagacacggttagatctgcgtccttctgtctaatactgtctggtaatgcc 61
>33372_bta-mir-429:mirbase
Length = 84
Score = 58.0 bits (29), Expect = 8e-10
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 8 gtcttaccagacaaagttagatctcgctatttctgtctaatactgtctggtaatgcc 64
||||||||||||| ||||||||| | | |||||||||||||||||||||||||||
Sbjct: 16 gtcttaccagacacggttagatctgg-tccttctgtctaatactgtctggtaatgcc 71
>34094_ssc-mir-429:mirbase
Length = 81
Score = 56.0 bits (28), Expect = 3e-09
Identities = 53/60 (88%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 5 ggtgtcttaccagacaaagttagatctcgctatttctgtctaatactgtctggtaatgcc 64
||||||||||||| || ||||||||| | | || |||||||||||||||||||||||||
Sbjct: 11 ggtgtcttaccaggcacggttagatctggttctt-ctgtctaatactgtctggtaatgcc 69
>26843_cfa-mir-429:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 2e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 8 gtcttaccagacaaagttagatctcgctatttctgtctaatactgtctggtaatgcc 64
||||||||||||| ||||||||| | | | ||||||||||||||||||||||||
Sbjct: 16 gtcttaccagacacggttagatctgggttctggtgtctaatactgtctggtaatgcc 72
>34652_fru-mir-429:mirbase
Length = 76
Score = 50.1 bits (25), Expect = 2e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 8 gtcttaccagacaaagttagatctcgctatttctgtctaatactgtctggtaatgcc 64
||||||||||||| ||||||| | |||| ||||||||||||||||||||||||
Sbjct: 14 gtcttaccagacatggttagatgtaattattgttgtctaatactgtctggtaatgcc 70
>34800_tni-mir-429:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 2e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 8 gtcttaccagacaaagttagatctcgctatttctgtctaatactgtctggtaatgcc 64
||||||||||||| ||||||| | |||| ||||||||||||||||||||||||
Sbjct: 16 gtcttaccagacatggttagatgtaattattgttgtctaatactgtctggtaatgcc 72
>34400_dre-mir-429:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 tgtctaatactgtctggtaatgcc 64
||||||||||||||||||||||||
Sbjct: 47 tgtctaatactgtctggtaatgcc 70
>27902_mml-mir-429:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 tctgtctaatactgtctggtaa 60
||||||||||||||||||||||
Sbjct: 45 tctgtctaatactgtctggtaa 66
>28649_hsa-mir-429:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 tctgtctaatactgtctggtaa 60
||||||||||||||||||||||
Sbjct: 45 tctgtctaatactgtctggtaa 66
>31003_ppy-mir-429:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 tctgtctaatactgtctggtaa 60
||||||||||||||||||||||
Sbjct: 45 tctgtctaatactgtctggtaa 66
>34401_dre-mir-429b:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 41 tgtctaatactgtctggtaatgccat 66
|||||||||||| |||||||||||||
Sbjct: 63 tgtctaatactgcctggtaatgccat 88
>34889_sko-mir-200:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 tctaatactgtctggtaatg 62
||||||||||||||||||||
Sbjct: 59 tctaatactgtctggtaatg 78
>24693_bfl-mir-200b:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctaatactgtctggtaatg 62
|||||||||||||||||||
Sbjct: 58 ctaatactgtctggtaatg 76
