miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27555_lla-mir-30b:mirbase
Length = 88
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 accgagtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 accgagtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgaga 60
Query: 61 ggtggatgtttacttcagctgacttgga 88
||||||||||||||||||||||||||||
Sbjct: 61 ggtggatgtttacttcagctgacttgga 88
>27682_mml-mir-30b:mirbase
Length = 88
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 5 agtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgagaggtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5 agtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtg 64
Query: 65 gatgtttacttcagctgacttgga 88
||||||||||||||||||||||||
Sbjct: 65 gatgtttacttcagctgacttgga 88
>28191_mne-mir-30b:mirbase
Length = 88
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 5 agtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgagaggtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5 agtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtg 64
Query: 65 gatgtttacttcagctgacttgga 88
||||||||||||||||||||||||
Sbjct: 65 gatgtttacttcagctgacttgga 88
>28392_hsa-mir-30b:mirbase
Length = 88
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 5 agtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgagaggtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5 agtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtg 64
Query: 65 gatgtttacttcagctgacttgga 88
||||||||||||||||||||||||
Sbjct: 65 gatgtttacttcagctgacttgga 88
>30067_ppa-mir-30b:mirbase
Length = 88
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 5 agtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgagaggtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5 agtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtg 64
Query: 65 gatgtttacttcagctgacttgga 88
||||||||||||||||||||||||
Sbjct: 65 gatgtttacttcagctgacttgga 88
>30178_ptr-mir-30b:mirbase
Length = 88
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 5 agtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgagaggtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5 agtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtg 64
Query: 65 gatgtttacttcagctgacttgga 88
||||||||||||||||||||||||
Sbjct: 65 gatgtttacttcagctgacttgga 88
>30783_ppy-mir-30b:mirbase
Length = 88
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 5 agtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgagaggtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5 agtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtg 64
Query: 65 gatgtttacttcagctgacttgga 88
||||||||||||||||||||||||
Sbjct: 65 gatgtttacttcagctgacttgga 88
>28280_ggo-mir-30b:mirbase
Length = 88
Score = 151 bits (76), Expect = 1e-37
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 5 agtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgagaggtg 64
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5 agttccagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtg 64
Query: 65 gatgtttacttcagctgacttgga 88
||||||||||||||||||||||||
Sbjct: 65 gatgtttacttcagctgacttgga 88
>33940_ssc-mir-30b:mirbase
Length = 76
Score = 135 bits (68), Expect = 6e-33
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 7 tttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgagaggtgga 66
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 tttcagttcgtgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 60
Query: 67 tgtttacttcagctga 82
||||||||||||||||
Sbjct: 61 tgtttacttcagctga 76
>33941_ssc-mir-30b:mirbase
Length = 76
Score = 135 bits (68), Expect = 6e-33
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 7 tttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgagaggtgga 66
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 tttcagttcgtgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 60
Query: 67 tgtttacttcagctga 82
||||||||||||||||
Sbjct: 61 tgtttacttcagctga 76
>32688_rno-mir-30b:mirbase
Length = 87
Score = 117 bits (59), Expect = 1e-27
Identities = 80/87 (91%)
Strand = Plus / Plus
Query: 2 ccgagtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgagag 61
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||
Sbjct: 1 ccgagtttcagttcatgtaaacatcctacactcagctgtcatacatgagttggctgggat 60
Query: 62 gtggatgtttacttcagctgacttgga 88
|||||||||||| ||||||| ||||||
Sbjct: 61 gtggatgtttacgtcagctgtcttgga 87
>32689_rno-mir-30b:mirbase
Length = 87
Score = 117 bits (59), Expect = 1e-27
Identities = 80/87 (91%)
Strand = Plus / Plus
Query: 2 ccgagtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgagag 61
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||
Sbjct: 1 ccgagtttcagttcatgtaaacatcctacactcagctgtcatacatgagttggctgggat 60
Query: 62 gtggatgtttacttcagctgacttgga 88
|||||||||||| ||||||| ||||||
Sbjct: 61 gtggatgtttacgtcagctgtcttgga 87
>33165_bta-mir-30b:mirbase
Length = 88
Score = 115 bits (58), Expect = 5e-27
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 7 tttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgagaggtgga 66
|||||||||||||||||||||||||||||||||||| ||| | | ||||| ||||||||
Sbjct: 7 tttcagttcatgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtgga 66
Query: 67 tgtttacttcagctgacttgga 88
||||||||||||||||||||||
Sbjct: 67 tgtttacttcagctgacttgga 88
>33166_bta-mir-30b:mirbase
Length = 88
Score = 115 bits (58), Expect = 5e-27
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 7 tttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgagaggtgga 66
|||||||||||||||||||||||||||||||||||| ||| | | ||||| ||||||||
Sbjct: 7 tttcagttcatgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtgga 66
Query: 67 tgtttacttcagctgacttgga 88
||||||||||||||||||||||
Sbjct: 67 tgtttacttcagctgacttgga 88
>31807_mmu-mir-30b:mirbase
Length = 96
Score = 111 bits (56), Expect = 8e-26
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 5 agtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgagaggtg 64
|||||||||||||||||||||||||||||||||||| ||||||| ||||||| || |||
Sbjct: 9 agtttcagttcatgtaaacatcctacactcagctgtcatacatgcgttggctgggatgtg 68
Query: 65 gatgtttacttcagctgacttgga 88
||||||||| ||||||| ||||||
Sbjct: 69 gatgtttacgtcagctgtcttgga 92
>26654_cfa-mir-30b:mirbase
Length = 60
Score = 103 bits (52), Expect = 2e-23
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 17 tgtaaacatcctacactcagctgtaatacatggattggctgagaggtggatgtttacttc 76
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactcagctgtagtacatggattggctgggaggtggatgtttacttc 60
>26975_eca-mir-30b:mirbase
Length = 58
Score = 99.6 bits (50), Expect = 3e-22
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 17 tgtaaacatcctacactcagctgtaatacatggattggctgagaggtggatgtttact 74
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 1 tgtaaacatcctacactcagctgtactacatggattggctgggaggtggatgtttact 58
>25917_gga-mir-30b:mirbase
Length = 87
Score = 67.9 bits (34), Expect = 1e-12
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 11 agttcatgtaaacatcctacactcagctgtaatacatggattggctgagaggtggatgtt 70
||||| |||||||||||||||||||||| ||| | ||| ||||| | ||||||||||
Sbjct: 10 agttcctgtaaacatcctacactcagctataacaagtggtagggctggggggtggatgtt 69
Query: 71 tacttcagctgacttgga 88
||||||| ||||||||||
Sbjct: 70 tacttcaactgacttgga 87
>31451_oan-mir-30b:mirbase
Length = 111
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 1 accgagtttcagttcatgtaaacatcctacactcagctgt 40
|||||||| ||||||||||||||||||||||||||||||
Sbjct: 13 accgagttcgagttcatgtaaacatcctacactcagctgt 52
>34248_dre-mir-30b:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tgtaaacatcctacactcagctgt 40
||||||||||||||||||||||||
Sbjct: 16 tgtaaacatcctacactcagctgt 39
>34573_fru-mir-30b:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tgtaaacatcctacactcagctgt 40
||||||||||||||||||||||||
Sbjct: 16 tgtaaacatcctacactcagctgt 39
>34720_tni-mir-30b:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tgtaaacatcctacactcagctgt 40
||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactcagctgt 30
>25733_xtr-mir-30b:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 atgtaaacatcctacactcagct 38
|||||||||||||||||||||||
Sbjct: 11 atgtaaacatcctacactcagct 33
