miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AP008217.1/27843705-27843861 39947:Oryza sativa
Japonica Group
Length = 157
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 12 actcccttcgtcccaaaatataaa 35
||||||||||||||||||||||||
Sbjct: 152 actcccttcgtcccaaaatataaa 129
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 62 tatttagggacagagggagtaa 83
||||||||||||||||||||||
Sbjct: 25 tatttagggacagagggagtaa 4
>RF00906;MIR1122;AC093953.2/44822-44955 39947:Oryza sativa
Japonica Group
Length = 134
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 actcccttcgtcccaaaatataaa 35
||||||||||||||||||||||||
Sbjct: 6 actcccttcgtcccaaaatataaa 29
>RF00906;MIR1122;AAAA02032490.1/12014-11907 39946:Oryza sativa
Indica Group
Length = 108
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 actcccttcgtcccaaaatataa 34
|||||||||||||||||||||||
Sbjct: 6 actcccttcgtcccaaaatataa 28
>RF00906;MIR1122;AAAA02012175.1/18488-18377 39946:Oryza sativa
Indica Group
Length = 112
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 actcccttcgtcccaaaatataa 34
|||||||||||||||||||||||
Sbjct: 6 actcccttcgtcccaaaatataa 28
>RF00906;MIR1122;AP004672.3/95919-95808 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 actcccttcgtcccaaaatataa 34
|||||||||||||||||||||||
Sbjct: 6 actcccttcgtcccaaaatataa 28
>RF00906;MIR1122;AP008208.1/16739175-16739286 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 actcccttcgtcccaaaatataa 34
|||||||||||||||||||||||
Sbjct: 6 actcccttcgtcccaaaatataa 28
>RF00906;MIR1122;AL607005.3/74396-74290 39947:Oryza sativa Japonica
Group
Length = 107
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 12 actcccttcgtcccaaaatataa 34
|||||||||||||||||||||||
Sbjct: 102 actcccttcgtcccaaaatataa 80
>RF00906;MIR1122;AAAA02035130.1/4826-4960 39946:Oryza sativa Indica
Group
Length = 135
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tgtatttagggacagagggagta 82
|||||||||||||||||||||||
Sbjct: 109 tgtatttagggacagagggagta 131
>RF00906;MIR1122;AP005546.3/18651-18523 39947:Oryza sativa
Japonica Group
Length = 129
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 62 tatttagggacagagggagtaat 84
|||||||||||||||||||||||
Sbjct: 25 tatttagggacagagggagtaat 3
>RF01058;MIR806;AACV01023825.1/45861-45621 39947:Oryza sativa
Japonica Group
Length = 241
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 62 tatttagggacagagggagtaa 83
||||||||||||||||||||||
Sbjct: 22 tatttagggacagagggagtaa 1
>RF01058;MIR806;AAAA02033301.1/5869-5628 39946:Oryza sativa Indica
Group
Length = 242
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 62 tatttagggacagagggagtaa 83
||||||||||||||||||||||
Sbjct: 22 tatttagggacagagggagtaa 1
>RF00906;MIR1122;AAAA02021210.1/61042-60904 39946:Oryza sativa
Indica Group
Length = 139
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 actcccttcgtcccaaaatata 33
||||||||||||||||||||||
Sbjct: 134 actcccttcgtcccaaaatata 113
>RF00906;MIR1122;AAAA02033081.1/3802-3711 39946:Oryza sativa
Indica Group
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 actcccttcgtcccaaaatataaata 37
||||||| ||||||||||||||||||
Sbjct: 6 actccctccgtcccaaaatataaata 31
>RF00906;MIR1122;AAAA02002805.1/1308-1181 39946:Oryza sativa Indica
Group
Length = 128
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 tatttagggacagagggagtaa 83
||||||||||||||||||||||
Sbjct: 104 tatttagggacagagggagtaa 125
