miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28184_mne-mir-24-2:mirbase
Length = 73
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttc 60
Query: 61 agcaggaacagga 73
|||||||||||||
Sbjct: 61 agcaggaacagga 73
>28270_ggo-mir-24:mirbase
Length = 73
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttc 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60
Query: 61 agcaggaacagg 72
||||||||||||
Sbjct: 61 agcaggaacagg 72
>28378_hsa-mir-24-2:mirbase
Length = 73
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttc 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60
Query: 61 agcaggaacagg 72
||||||||||||
Sbjct: 61 agcaggaacagg 72
>30057_ppa-mir-24-2:mirbase
Length = 73
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttc 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60
Query: 61 agcaggaacagg 72
||||||||||||
Sbjct: 61 agcaggaacagg 72
>30164_ptr-mir-24-2:mirbase
Length = 73
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttc 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60
Query: 61 agcaggaacagg 72
||||||||||||
Sbjct: 61 agcaggaacagg 72
>30769_ppy-mir-24-2:mirbase
Length = 73
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttc 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60
Query: 61 agcaggaacagg 72
||||||||||||
Sbjct: 61 agcaggaacagg 72
>33148_bta-mir-24-2:mirbase
Length = 72
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttc 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttgatttgtgcacactggctcagttc 60
Query: 61 agcaggaacagg 72
||||||||||||
Sbjct: 61 agcaggaacagg 72
>33928_ssc-mir-24-1:mirbase
Length = 72
Score = 127 bits (64), Expect = 1e-30
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttc 60
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttc 60
Query: 61 agcaggaacagg 72
||||||||||||
Sbjct: 61 agcaggaacagg 72
>26961_eca-mir-24:mirbase
Length = 68
Score = 125 bits (63), Expect = 4e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 7 ctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttcagcagg 66
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 ctcccgtgcctactgagctgaaacacagttggtttgtgcagactggctcagttcagcagg 60
Query: 67 aacagga 73
|||||||
Sbjct: 61 aacagga 67
>26640_cfa-mir-24-2:mirbase
Length = 62
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 11 cgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttcagcaggaaca 70
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 1 cgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcaggaaca 60
Query: 71 gg 72
||
Sbjct: 61 gg 62
>27346_mdo-mir-24-2:mirbase
Length = 73
Score = 89.7 bits (45), Expect = 2e-19
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 5 gcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttcagca 64
|||||| |||||||||||||||||||||||||| |||| | |||||||||||||||||
Sbjct: 1 gcctcctgtgcctactgagctgaaacacagttgctttggataaactggctcagttcagca 60
Query: 65 ggaacagga 73
|||||||||
Sbjct: 61 ggaacagga 69
>31792_mmu-mir-24-2:mirbase
Length = 107
Score = 67.9 bits (34), Expect = 9e-13
Identities = 61/69 (88%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 5 gcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttcagca 64
|||||||||||||||||||||||| ||||||| || | ||||||||||||||||||
Sbjct: 18 gcctcccgtgcctactgagctgaa--acagttgattccagtgcactggctcagttcagca 75
Query: 65 ggaacagga 73
|||||||||
Sbjct: 76 ggaacagga 84
>32513_mmu-mir-3074-2:mirbase
Length = 83
Score = 67.9 bits (34), Expect = 9e-13
Identities = 61/69 (88%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 5 gcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttcagca 64
||||||||||||||||||||||||||| |||| || | ||||||||||||||||||
Sbjct: 76 gcctcccgtgcctactgagctgaaaca--gttgattccagtgcactggctcagttcagca 19
Query: 65 ggaacagga 73
|||||||||
Sbjct: 18 ggaacagga 10
>32514_mmu-mir-3074-2:mirbase
Length = 83
Score = 67.9 bits (34), Expect = 9e-13
Identities = 61/69 (88%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 5 gcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttcagca 64
||||||||||||||||||||||||||| |||| || | ||||||||||||||||||
Sbjct: 76 gcctcccgtgcctactgagctgaaaca--gttgattccagtgcactggctcagttcagca 19
Query: 65 ggaacagga 73
|||||||||
Sbjct: 18 ggaacagga 10
>32676_rno-mir-24-2:mirbase
Length = 108
Score = 60.0 bits (30), Expect = 2e-10
Identities = 60/69 (86%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 5 gcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttcagca 64
|||||| |||||||||||||||||||| |||| || | ||||||||||||||||||
Sbjct: 18 gcctcctgtgcctactgagctgaaaca--gttgattccagtgcactggctcagttcagca 75
Query: 65 ggaacagga 73
|||||||||
Sbjct: 76 ggaacagga 84
>25716_xtr-mir-24a:mirbase
Length = 67
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 cacactggctcagttcagcaggaacagga 73
|||||||||||||||||||||||||||||
Sbjct: 38 cacactggctcagttcagcaggaacagga 66
>25717_xtr-mir-24a:mirbase
Length = 67
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 cacactggctcagttcagcaggaacagga 73
|||||||||||||||||||||||||||||
Sbjct: 38 cacactggctcagttcagcaggaacagga 66
>26413_tgu-mir-24:mirbase
Length = 132
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 cacactggctcagttcagcaggaacagga 73
|||||||||||||||||||||||||||||
Sbjct: 96 cacactggctcagttcagcaggaacagga 124
>26639_cfa-mir-24-1:mirbase
Length = 62
Score = 58.0 bits (29), Expect = 9e-10
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 40 ttgtgcacactggctcagttcagcaggaacagg 72
|||| ||||||||||||||||||||||||||||
Sbjct: 30 ttgtacacactggctcagttcagcaggaacagg 62
>26962_eca-mir-24-2:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 cacactggctcagttcagcaggaacagga 73
|||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacagga 67
>27667_mml-mir-24-1:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 cacactggctcagttcagcaggaacagga 73
|||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacagga 67
>28183_mne-mir-24-1:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 cacactggctcagttcagcaggaacagga 73
|||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacagga 67
>28377_hsa-mir-24-1:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 cacactggctcagttcagcaggaacagga 73
|||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacagga 67
>29230_hsa-mir-3074:mirbase
Length = 81
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 45 cacactggctcagttcagcaggaacagga 73
|||||||||||||||||||||||||||||
Sbjct: 36 cacactggctcagttcagcaggaacagga 8
>29231_hsa-mir-3074:mirbase
Length = 81
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 45 cacactggctcagttcagcaggaacagga 73
|||||||||||||||||||||||||||||
Sbjct: 36 cacactggctcagttcagcaggaacagga 8
>30056_ppa-mir-24-1:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 cacactggctcagttcagcaggaacagga 73
|||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacagga 67
>30163_ptr-mir-24-1:mirbase
Length = 67
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 cacactggctcagttcagcaggaacagga 73
|||||||||||||||||||||||||||||
Sbjct: 38 cacactggctcagttcagcaggaacagga 66
>30768_ppy-mir-24-1:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 cacactggctcagttcagcaggaacagga 73
|||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacagga 67
>31791_mmu-mir-24-1:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 cacactggctcagttcagcaggaacagga 73
|||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacagga 67
>32511_mmu-mir-3074-1:mirbase
Length = 85
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 45 cacactggctcagttcagcaggaacagga 73
|||||||||||||||||||||||||||||
Sbjct: 38 cacactggctcagttcagcaggaacagga 10
>32512_mmu-mir-3074-1:mirbase
Length = 85
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 45 cacactggctcagttcagcaggaacagga 73
|||||||||||||||||||||||||||||
Sbjct: 38 cacactggctcagttcagcaggaacagga 10
>32675_rno-mir-24-1:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 cacactggctcagttcagcaggaacagga 73
|||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacagga 67
>33024_rno-mir-3074:mirbase
Length = 117
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 45 cacactggctcagttcagcaggaacagga 73
|||||||||||||||||||||||||||||
Sbjct: 51 cacactggctcagttcagcaggaacagga 23
>33147_bta-mir-24-1:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 cacactggctcagttcagcaggaacagga 73
|||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacagga 67
>33929_ssc-mir-24-2:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 cacactggctcagttcagcaggaacagga 73
|||||||||||||||||||||||||||||
Sbjct: 47 cacactggctcagttcagcaggaacagga 75
>34230_dre-mir-24-3:mirbase
Length = 142
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 acactggctcagttcagcaggaacagga 73
||||||||||||||||||||||||||||
Sbjct: 76 acactggctcagttcagcaggaacagga 103
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 gcctcccgtgcctactgagctga 27
|||||||||||||||||||||||
Sbjct: 37 gcctcccgtgcctactgagctga 59
>31442_oan-mir-24:mirbase
Length = 84
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 47 cactggctcagttcagcaggaacagga 73
|||||||||||||||||||||||||||
Sbjct: 49 cactggctcagttcagcaggaacagga 75
>34228_dre-mir-24-1:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 47 cactggctcagttcagcaggaacagga 73
|||||||||||||||||||||||||||
Sbjct: 46 cactggctcagttcagcaggaacagga 72
>34709_tni-mir-24-1:mirbase
Length = 70
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 47 cactggctcagttcagcaggaacagga 73
|||||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacagga 67
>25908_gga-mir-24:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 48 actggctcagttcagcaggaacagga 73
||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacagga 67
>34561_fru-mir-24-1:mirbase
Length = 79
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 48 actggctcagttcagcaggaacagga 73
||||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacagga 77
>34562_fru-mir-24-1:mirbase
Length = 79
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 48 actggctcagttcagcaggaacagga 73
||||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacagga 77
>25444_pma-mir-24:mirbase
Length = 94
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 cactggctcagttcagcaggaacag 71
|||||||||||||||||||||||||
Sbjct: 55 cactggctcagttcagcaggaacag 79
>34229_dre-mir-24-2:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 actggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||
Sbjct: 49 actggctcagttcagcaggaacagg 73
>34231_dre-mir-24-4:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 49 ctggctcagttcagcaggaacagg 72
||||||||||||||||||||||||
Sbjct: 55 ctggctcagttcagcaggaacagg 78
>34563_fru-mir-24-2:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 49 ctggctcagttcagcaggaacagg 72
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
>34710_tni-mir-24-2:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 49 ctggctcagttcagcaggaacagg 72
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
>27345_mdo-mir-24-1:mirbase
Length = 57
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 cacactggctcagttcagcagga 67
|||||||||||||||||||||||
Sbjct: 35 cacactggctcagttcagcagga 57
>25660_xla-mir-24b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49 ctggctcagttcagcagga 67
|||||||||||||||||||
Sbjct: 44 ctggctcagttcagcagga 62
>25718_xtr-mir-24b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49 ctggctcagttcagcagga 67
|||||||||||||||||||
Sbjct: 44 ctggctcagttcagcagga 62
