miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00456;mir-34;ABRO01055556.1/2540-2461 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 125 bits (63), Expect = 8e-29
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 1 agtctagttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacac 60
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2 agtctagttactaggcagtgtagttagctgattgctgaccgtaccaatcactaaccacac 61
Query: 61 ggccaggtaaaaaga 75
|||||||||||||||
Sbjct: 62 ggccaggtaaaaaga 76
>RF00456;mir-34;ABVD01341709.1/1775-1696 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 80
Score = 121 bits (61), Expect = 1e-27
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 1 agtctagttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacac 60
||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2 agtctggttactaggcagtgtagttagctgattgctattagtaccaatcactaaccacac 61
Query: 61 ggccaggtaaaaagatt 77
|||||||||||||||||
Sbjct: 62 ggccaggtaaaaagatt 78
>RF00456;mir-34;ABRQ01219522.1/667-588 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 113 bits (57), Expect = 3e-25
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 1 agtctagttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacac 60
||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2 agtctggttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 61
Query: 61 ggccaggtaaaaagatt 77
|||||||||| |||||
Sbjct: 62 agccaggtaaagagatt 78
>RF00456;mir-34;AAPN01276489.1/4603-4524 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 93.7 bits (47), Expect = 3e-19
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 1 agtctagttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacac 60
||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 2 agtctagttactaggcagtgtagttagctgattgctattaacaccaatcactagccacac 61
Query: 61 ggccaggtaaaaaga 75
||||||||||||||
Sbjct: 62 agccaggtaaaaaga 76
>RF00456;mir-34;AADN02058045.1/6075-5997 9031:Gallus gallus
(chicken)
Length = 79
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 7 gttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacacggccag 66
||||||||||||||||||||||||||||| || |||||||||||||||||| |||||
Sbjct: 7 gttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccag 66
Query: 67 gtaaaaag 74
||||||||
Sbjct: 67 gtaaaaag 74
>RF00456;mir-34;ABQF01045704.1/20460-20539 59729:Taeniopygia
guttata
Length = 80
Score = 79.8 bits (40), Expect = 4e-15
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 11 ccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacacggccaggtaa 70
||||||||||||||||||||||||| | || | ||||||||| ||||||||||||||||
Sbjct: 12 ccaggcagtgtagttagctgattgcccaaagcaacaatcactagccacacggccaggtaa 71
Query: 71 aaag 74
||||
Sbjct: 72 aaag 75
>RF00456;mir-34;AAWZ01034188.1/3307-3229 28377:Anolis carolinensis
(green anole)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ccaggcagtgtagttagctgattg 34
||||||||||||||||||||||||
Sbjct: 12 ccaggcagtgtagttagctgattg 35
>RF00456;mir-34;ABQF01045704.1/19863-19946 59729:Taeniopygia
guttata
Length = 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 caggcagtgtagttagctgattg 34
|||||||||||||||||||||||
Sbjct: 13 caggcagtgtagttagctgattg 35
>RF00456;mir-34;AADN02058045.1/6812-6729 9031:Gallus gallus
(chicken)
Length = 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 caggcagtgtagttagctgattg 34
|||||||||||||||||||||||
Sbjct: 13 caggcagtgtagttagctgattg 35
>RF00456;mir-34;AAPN01276489.1/6299-6216 9258:Ornithorhynchus
anatinus (platypus)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 aggcagtgtagttagctgattg 34
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
>RF00456;mir-34;ABQO011207158.1/502-419 9315:Macropus eugenii
(tammar wallaby)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 aggcagtgtagttagctgattg 34
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
>RF00456;mir-34;AAWZ01034188.1/4744-4661 28377:Anolis carolinensis
(green anole)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 aggcagtgtagttagctgattg 34
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
