miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00486;mir-129;ABQF01002214.1/108-198 59729:Taeniopygia guttata
          Length = 91

 Score =  117 bits (59), Expect = 3e-26
 Identities = 81/87 (93%), Gaps = 1/87 (1%)
 Strand = Plus / Plus

                                                                      
Query: 6  cttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagccct 64
          ||||| ||||||||||||||||||||||||||||||||||||   || || |||||||||
Sbjct: 5  cttcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccct 64

                                     
Query: 65 taccccaaaaagcattcgcggagggcg 91
          |||||||||||||||||||||||||||
Sbjct: 65 taccccaaaaagcattcgcggagggcg 91




>RF00486;mir-129;ABRQ01241339.1/77-1 9813:Procavia capensis (cape
          rock hyrax)
          Length = 77

 Score =  113 bits (57), Expect = 4e-25
 Identities = 76/80 (95%), Gaps = 3/80 (3%)
 Strand = Plus / Plus

                                                                      
Query: 2  tgcccttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 61
          ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgcccttcgcgaatctttt-gcggtctgggcttgctgtacataactcaatagccggaagc 59

                              
Query: 62 ccttaccccaaaaagcattc 81
          ||||||||  ||||||||||
Sbjct: 60 ccttaccc--aaaagcattc 77




>RF00486;mir-129;CR376745.11/92203-92293 7955:Danio rerio
          (zebrafish)
          Length = 91

 Score = 83.8 bits (42), Expect = 4e-16
 Identities = 76/86 (88%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                      
Query: 7  ttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagc-cggaagccctt 65
          |||| |||||||||||||||||||||||||||| ||||| |   ||||  ||||||||||
Sbjct: 6  ttcgcgaatctttttgcggtctgggcttgctgttcataagtatctagctgggaagccctt 65

                                    
Query: 66 accccaaaaagcattcgcggagggcg 91
          ||||||||||||||| ||||| ||||
Sbjct: 66 accccaaaaagcatttgcggaaggcg 91




>RF00486;mir-129;CR376774.9/14862-14774 7955:Danio rerio
          (zebrafish)
          Length = 89

 Score = 73.8 bits (37), Expect = 3e-13
 Identities = 72/82 (87%), Gaps = 5/82 (6%)
 Strand = Plus / Plus

                                                                      
Query: 12 gaatctttttgcggtctgggcttgctgtacataact--caatagccggaagcccttaccc 69
          |||||||||||||||||||||||||||| |  ||||  |||| |   |||||||||||||
Sbjct: 11 gaatctttttgcggtctgggcttgctgttctcaactatcaatgg---gaagcccttaccc 67

                                
Query: 70 caaaaagcattcgcggagggcg 91
          ||||||||||| ||||||||||
Sbjct: 68 caaaaagcatttgcggagggcg 89




>RF00486;mir-129;BAAF04049597.1/1635-1547 8090:Oryzias latipes
          (Japanese medaka)
          Length = 89

 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 69/79 (87%), Gaps = 5/79 (6%)
 Strand = Plus / Plus

                                                                      
Query: 12 gaatctttttgcggtctgggcttgctgtacataactcaatagcc--ggaagcccttaccc 69
          |||||||||||||||||||||||||||| |||   ||| ||  |  ||||||||||||||
Sbjct: 11 gaatctttttgcggtctgggcttgctgtgcat---tcattaatctgggaagcccttaccc 67

                             
Query: 70 caaaaagcattcgcggagg 88
          ||||||||||||| |||||
Sbjct: 68 caaaaagcattcgtggagg 86




>RF00486;mir-129;BAAF04038928.1/6397-6487 8090:Oryzias latipes
          (Japanese medaka)
          Length = 91

 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                              
Query: 56 ggaagcccttaccccaaaaagcattcgcggagggcg 91
          ||||||||||||||||||||||||| ||||||||||
Sbjct: 56 ggaagcccttaccccaaaaagcatttgcggagggcg 91




>RF00486;mir-129;BAAE01197820.1/2737-2827 8090:Oryzias latipes
          (Japanese medaka)
          Length = 91

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 56/63 (88%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                      
Query: 15 tctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttaccccaaa 73
          ||||||||||||||||||||||||| | |||   | ||||| ||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttcctaaggaagtagccaggaagcccttaccccaaa 73

             
Query: 74 aag 76
          |||
Sbjct: 74 aag 76




>RF00486;mir-129;AANH01000122.1/1544-1631 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 88

 Score = 60.0 bits (30), Expect = 5e-09
 Identities = 60/69 (86%), Gaps = 2/69 (2%)
 Strand = Plus / Plus

                                                                      
Query: 12 gaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttacccca 71
          |||||||||||||||||||||||||||| ||||    | |  | ||||||||||||||||
Sbjct: 11 gaatctttttgcggtctgggcttgctgtgcatacacgact--ctggaagcccttacccca 68

                   
Query: 72 aaaagcatt 80
          |||||||||
Sbjct: 69 aaaagcatt 77




>RF00486;mir-129;AAFR03031917.1/14139-14048 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 92

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 58/65 (89%), Gaps = 2/65 (3%)
 Strand = Plus / Plus

                                                                      
Query: 14 atctttttgcggtctgggcttgctg-tacataactcaatag-ccggaagcccttacccca 71
          ||||||||||||||||||||||||| | | ||| ||| ||| | ||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgttccttaaatcagtagtcaggaagcccttacccca 72

               
Query: 72 aaaag 76
          |||||
Sbjct: 73 aaaag 77




>RF00486;mir-129;AAVX01173776.1/393-484 7868:Callorhinchus milii
          (ghost shark)
          Length = 92

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 11 tgaatctttttgcggtctgggcttgctgt 39
          |||||||||||||||||||||||||||||
Sbjct: 10 tgaatctttttgcggtctgggcttgctgt 38




>RF00486;mir-129;CAAE01017155.1/507-418 99883:Tetraodon
          nigroviridis
          Length = 90

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 12 gaatctttttgcggtctgggcttgctgt 39
          ||||||||||||||||||||||||||||
Sbjct: 11 gaatctttttgcggtctgggcttgctgt 38




>RF00486;mir-129;BAAF04098976.1/11798-11711 8090:Oryzias latipes
          (Japanese medaka)
          Length = 88

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 58/66 (87%), Gaps = 4/66 (6%)
 Strand = Plus / Plus

                                                                      
Query: 15 tctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttaccccaaa 73
          |||||||||||||||||||||||||    || | |||| || ||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt---caagttaatatccaggaagcccttaccccaaa 70

                
Query: 74 aagcat 79
          ||||||
Sbjct: 71 aagcat 76




>RF00486;mir-129;AAPY01581361.1/1091-1178 37347:Tupaia belangeri
          (northern tree shrew)
          Length = 88

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                    
Query: 14 atctttttgcggtctgggcttgctgt 39
          ||||||||||||||||||||||||||
Sbjct: 78 atctttttgcggtctgggcttgctgt 53




>RF00486;mir-129;AAGW01169874.1/1220-1131 9986:Oryctolagus
          cuniculus (rabbit)
          Length = 90

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 14 atctttttgcggtctgggcttgctgt 39
          ||||||||||||||||||||||||||
Sbjct: 11 atctttttgcggtctgggcttgctgt 36




>RF00486;mir-129;AAWZ01034774.1/20277-20368 28377:Anolis
          carolinensis (green anole)
          Length = 92

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 14 atctttttgcggtctgggcttgctgt 39
          ||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgt 38




>RF00486;mir-129;BX649263.6/91330-91421 7955:Danio rerio
          (zebrafish)
          Length = 92

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 58/65 (89%), Gaps = 4/65 (6%)
 Strand = Plus / Plus

                                                                      
Query: 15 tctttttgcggtctgggcttgctgtacat--aactcaatagcc-ggaagcccttacccca 71
          ||||||||||||||||||||||||| | |  ||| || ||||| ||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttccttgaac-cagtagccaggaagcccttacccca 72

               
Query: 72 aaaag 76
          |||||
Sbjct: 73 aaaag 77




>RF00486;mir-129;CAAB01002535.1/31821-31735 31033:Takifugu
          rubripes
          Length = 87

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 15 tctttttgcggtctgggcttgctgta 40
          ||||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgta 39




>RF00486;mir-129;AAGU02960740.1/758-849 9785:Loxodonta africana
          (African savanna elephant)
          Length = 92

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 15 tctttttgcggtctgggcttgctgt 39
          |||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38




>RF00486;mir-129;BX927136.11/83051-82960 7955:Danio rerio
          (zebrafish)
          Length = 92

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 15 tctttttgcggtctgggcttgctgt 39
          |||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38




>RF00486;mir-129;CAAB01002050.1/381-289 31033:Takifugu rubripes
          Length = 93

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 13 aatctttttgcggtctgggcttgct 37
          |||||||||||||||||||||||||
Sbjct: 13 aatctttttgcggtctgggcttgct 37



 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 56 ggaagcccttaccccaaaaagcatt 80
          |||||||||||||||||||||||||
Sbjct: 58 ggaagcccttaccccaaaaagcatt 82




>RF00486;mir-129;AANH01001665.1/69968-69881 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 88

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 56 ggaagcccttaccccaaaaagcat 79
          ||||||||||||||||||||||||
Sbjct: 53 ggaagcccttaccccaaaaagcat 76




>RF00486;mir-129;AAWZ01021483.1/628-534 28377:Anolis carolinensis
          (green anole)
          Length = 95

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 58 aagcccttaccccaaaaagcat 79
          ||||||||||||||||||||||
Sbjct: 62 aagcccttaccccaaaaagcat 83