miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00258;mir-130;AAFC03002359.1/2575-2495 9913:Bos taurus (cattle)
Length = 81
Score = 125 bits (63), Expect = 9e-29
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 2 gcctgcccgacactctttccctgttgcactactgtgggccactgggaagcagtgcaatga 61
||||||| |||||||||||||||||||||||||||| ||| |||| ||||||||||||||
Sbjct: 1 gcctgcctgacactctttccctgttgcactactgtgcgcccctggcaagcagtgcaatga 60
Query: 62 tgaaagggcatcggtcagg 80
|||||||||||||||||||
Sbjct: 61 tgaaagggcatcggtcagg 79
>RF00258;mir-130;AAGU02694209.1/964-1044 9785:Loxodonta africana
(African savanna elephant)
Length = 81
Score = 117 bits (59), Expect = 2e-26
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 2 gcctgcccgacactctttccctgttgcactactgtgggccactgggaagcagtgcaatga 61
|||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 1 gcctgcccaacactctttccctgttgcactactgtgggctgctaggaagcagtgcaatga 60
Query: 62 tgaaagggcatcggtcagg 80
||||||||||| |||||||
Sbjct: 61 tgaaagggcattggtcagg 79
>RF00258;mir-130;ABRO01142641.1/5547-5627 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 81
Score = 109 bits (55), Expect = 5e-24
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 2 gcctgcccgacactctttccctgttgcactactgtgggccactgggaagcagtgcaatga 61
||||| || |||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 1 gcctggccaacactctttccctgttgcactactgtgggctgctggaaagcagtgcaatga 60
Query: 62 tgaaagggcatcggtcagg 80
||||||||||| |||||||
Sbjct: 61 tgaaagggcattggtcagg 79
