miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00258;mir-130;AAFC03002359.1/2575-2495 9913:Bos taurus (cattle)
          Length = 81

 Score =  125 bits (63), Expect = 9e-29
 Identities = 75/79 (94%)
 Strand = Plus / Plus

                                                                      
Query: 2  gcctgcccgacactctttccctgttgcactactgtgggccactgggaagcagtgcaatga 61
          ||||||| |||||||||||||||||||||||||||| ||| |||| ||||||||||||||
Sbjct: 1  gcctgcctgacactctttccctgttgcactactgtgcgcccctggcaagcagtgcaatga 60

                             
Query: 62 tgaaagggcatcggtcagg 80
          |||||||||||||||||||
Sbjct: 61 tgaaagggcatcggtcagg 79




>RF00258;mir-130;AAGU02694209.1/964-1044 9785:Loxodonta africana
          (African savanna elephant)
          Length = 81

 Score =  117 bits (59), Expect = 2e-26
 Identities = 74/79 (93%)
 Strand = Plus / Plus

                                                                      
Query: 2  gcctgcccgacactctttccctgttgcactactgtgggccactgggaagcagtgcaatga 61
          |||||||| ||||||||||||||||||||||||||||||  || ||||||||||||||||
Sbjct: 1  gcctgcccaacactctttccctgttgcactactgtgggctgctaggaagcagtgcaatga 60

                             
Query: 62 tgaaagggcatcggtcagg 80
          ||||||||||| |||||||
Sbjct: 61 tgaaagggcattggtcagg 79




>RF00258;mir-130;ABRO01142641.1/5547-5627 10020:Dipodomys ordii
          (Ord's kangaroo rat)
          Length = 81

 Score =  109 bits (55), Expect = 5e-24
 Identities = 73/79 (92%)
 Strand = Plus / Plus

                                                                      
Query: 2  gcctgcccgacactctttccctgttgcactactgtgggccactgggaagcagtgcaatga 61
          ||||| || ||||||||||||||||||||||||||||||  |||| ||||||||||||||
Sbjct: 1  gcctggccaacactctttccctgttgcactactgtgggctgctggaaagcagtgcaatga 60

                             
Query: 62 tgaaagggcatcggtcagg 80
          ||||||||||| |||||||
Sbjct: 61 tgaaagggcattggtcagg 79