miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00691;mir-146;AAKN02022618.1/8712-8798 10141:Cavia porcellus
(domestic guinea pig)
Length = 87
Score = 161 bits (81), Expect = 2e-39
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 8 gtatcctcagctttgagaactgaattccatgggttgtgtcagtgtcagacctgtgaaatt 67
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3 gtatcctcagctttgagaactgaattccatgggttgtgtcagcgtcagacctgtgaaatt 62
Query: 68 cagttcttcagctgggatatctctg 92
|||||||||||||||||||||||||
Sbjct: 63 cagttcttcagctgggatatctctg 87
>RF00691;mir-146;ABRQ01081253.1/1221-1135 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 141 bits (71), Expect = 2e-33
Identities = 83/87 (95%)
Strand = Plus / Plus
Query: 6 gtgtatcctcagctttgagaactgaattccatgggttgtgtcagtgtcagacctgtgaaa 65
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct: 1 gtgtatcctcagctttgagaactgaattccatgggtcgtctcagtgtcagacctgtggag 60
Query: 66 ttcagttcttcagctgggatatctctg 92
|||||||||||||||||||||||||||
Sbjct: 61 ttcagttcttcagctgggatatctctg 87
>RF00691;mir-146;CAAA01220328.1/4488-4574 10090:Mus musculus
(house mouse)
Length = 87
Score = 125 bits (63), Expect = 1e-28
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 6 gtgtatcctcagctttgagaactgaattccatgggttgtgtcagtgtcagacctgtgaaa 65
|||||||| ||||| |||||||||||||||||||||| | ||| ||||||||||||||||
Sbjct: 1 gtgtatccccagctctgagaactgaattccatgggttatatcaatgtcagacctgtgaaa 60
Query: 66 ttcagttcttcagctgggatatctctg 92
||||||||||||||||||||| |||||
Sbjct: 61 ttcagttcttcagctgggatagctctg 87
>RF00691;mir-146;AAFR03012754.1/25474-25388 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 87
Score = 107 bits (54), Expect = 3e-23
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 7 tgtatcctcagctttgagaactgaattccatgggttgtgtcagtgtcagacctgtgaaat 66
|||||| ||||||||||||||||||||||||||||||| | || |||||||| |||||
Sbjct: 2 tgtatcttcagctttgagaactgaattccatgggttgtctttgtatcagacctatgaaac 61
Query: 67 tcagttcttcagctgggatatctctg 92
|||||||||||||||| |||||||||
Sbjct: 62 tcagttcttcagctggaatatctctg 87
>RF00691;mir-146;AADN02035864.1/43695-43788 9031:Gallus gallus
(chicken)
Length = 94
Score = 77.8 bits (39), Expect = 2e-14
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 6 gtgtatcctcagctttgagaactgaattccatgggttgt 44
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtatcctcagctttgagaactgaattccatgggttgt 39
>RF00691;mir-146;ABQF01019538.1/14288-14195 59729:Taeniopygia
guttata
Length = 94
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 13 ctcagctttgagaactgaattccatgggttgt 44
||||||||||||||||||||||||||||||||
Sbjct: 8 ctcagctttgagaactgaattccatgggttgt 39
>RF00691;mir-146;AAPN01152393.1/27352-27260 9258:Ornithorhynchus
anatinus (platypus)
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 13 ctcagctttgagaactgaattccatgggttgtg 45
|||||||||||||||||||||||| ||||||||
Sbjct: 8 ctcagctttgagaactgaattccacgggttgtg 40
>RF00691;mir-146;AAVX01275541.1/618-713 7868:Callorhinchus milii
(ghost shark)
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 cagctttgagaactgaattccatggg 40
||||| ||||||||||||||||||||
Sbjct: 10 cagctgtgagaactgaattccatggg 35
