miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00130;mir-192;ABRP01030089.1/479-588 132908:Pteropus vampyrus
(large flying fox)
Length = 110
Score = 186 bits (94), Expect = 4e-47
Identities = 100/102 (98%)
Strand = Plus / Plus
Query: 4 gagaccgagtgcacagggctctgacctatgaattgacagccagtgctctcgtctcccctc 63
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 4 gagaccgagtgcacagggctctgacctatgagttgacagccagtgctcttgtctcccctc 63
Query: 64 tggctgccaattccataggtcacaggtatgttcgcctcaatg 105
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 tggctgccaattccataggtcacaggtatgttcgcctcaatg 105
>RF00130;mir-192;AAYZ01125558.1/348-240 9978:Ochotona princeps
(American pika)
Length = 109
Score = 174 bits (88), Expect = 2e-43
Identities = 104/108 (96%), Gaps = 1/108 (0%)
Strand = Plus / Plus
Query: 3 tgagaccgagtgcacagggctctgacctatgaattgacagccagtgctctcgtctcccct 62
||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||
Sbjct: 3 tgagaccgagtgcacagggctctgacctatgaattgacagccagtgccc-cgtctgccct 61
Query: 63 ctggctgccaattccataggtcacaggtatgttcgcctcaatgccagc 110
||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 62 ctggctgccaattgcataggtcacaggtatgttcgcctcaatgccagc 109
>RF00130;mir-192;ABRQ01130986.1/8285-8394 9813:Procavia capensis
(cape rock hyrax)
Length = 110
Score = 174 bits (88), Expect = 2e-43
Identities = 100/104 (96%)
Strand = Plus / Plus
Query: 5 agaccgagtgcacagggctctgacctatgaattgacagccagtgctctcgtctcccctct 64
|||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
Sbjct: 5 agactgagtgcacagggctctgacctatgaattgacagccagtgccctcggctccccttt 64
Query: 65 ggctgccaattccataggtcacaggtatgttcgcctcaatgcca 108
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 ggctgccaattccataggtcacaggtatgttcgcctcaatgcca 108
>RF00130;mir-192;AC127556.4/107222-107331 10090:Mus musculus (house
mouse)
Length = 110
Score = 157 bits (79), Expect = 4e-38
Identities = 94/99 (94%)
Strand = Plus / Plus
Query: 12 gtgcacagggctctgacctatgaattgacagccagtgctctcgtctcccctctggctgcc 71
|||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||
Sbjct: 12 gtgcacagggctctgacctatgaattgacagccagtactcttttctctcctctggctgcc 71
Query: 72 aattccataggtcacaggtatgttcgcctcaatgccagc 110
||||||||||||||||||||||||| |||||||||||||
Sbjct: 72 aattccataggtcacaggtatgttcacctcaatgccagc 110
>RF00130;mir-192;ABRO01037016.1/11465-11572 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 108
Score = 147 bits (74), Expect = 3e-35
Identities = 97/102 (95%), Gaps = 2/102 (1%)
Strand = Plus / Plus
Query: 5 agaccgagtgcacagggctctgacctatgaattgacagccagtgctctcgtctcccctct 64
|||||||||||||| |||||||||||||||||||||||||||||| || |||||||| ||
Sbjct: 5 agaccgagtgcacaaggctctgacctatgaattgacagccagtgcgct-gtctcccc-ct 62
Query: 65 ggctgccaattccataggtcacaggtatgttcgcctcaatgc 106
|||||||||||||||||||||||||||||||||||| |||||
Sbjct: 63 ggctgccaattccataggtcacaggtatgttcgcctgaatgc 104
>RF00130;mir-192;AANN01720898.1/1196-1090 9365:Erinaceus europaeus
(western European hedgehog)
Length = 107
Score = 145 bits (73), Expect = 1e-34
Identities = 99/107 (92%), Gaps = 3/107 (2%)
Strand = Plus / Plus
Query: 4 gagaccgagtgcacagggctctgacctatgaattgacagccagtgctctcgtctcccctc 63
||||| |||||| |||||||||||||||||| |||||||||||||| ||| |||||||
Sbjct: 4 gagacagagtgcgcagggctctgacctatgacttgacagccagtgccctc---tcccctc 60
Query: 64 tggctgccaattccataggtcacaggtatgttcgcctcaatgccagc 110
||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 61 tggctgccaattccataggtcacaggtatgttcacctcaatgccagc 107
>RF00130;mir-192;AAIY01704218.1/882-773 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 110
Score = 139 bits (70), Expect = 8e-33
Identities = 97/106 (91%)
Strand = Plus / Plus
Query: 5 agaccgagtgcacagggctctgacctatgaattgacagccagtgctctcgtctcccctct 64
|||||||||||||| | |||||||||||||||||||||||||||| | | |||||||||
Sbjct: 5 agaccgagtgcacaagtctctgacctatgaattgacagccagtgccttgggctcccctct 64
Query: 65 ggctgccaattccataggtcacaggtatgttcgcctcaatgccagc 110
|||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 65 ggctgccaataccataggtcacaggtatgtttgcctccatgccagc 110
>RF00130;mir-192;AAPE01041994.1/454-563 59463:Myotis lucifugus
(little brown bat)
Length = 110
Score = 105 bits (53), Expect = 1e-22
Identities = 83/93 (89%)
Strand = Plus / Plus
Query: 4 gagaccgagtgcacagggctctgacctatgaattgacagccagtgctctcgtctcccctc 63
|||||| ||||||||||||||| ||||||||||||||||||| |||| || |||||||
Sbjct: 4 gagacccagtgcacagggctcttccctatgaattgacagccaggtctcttgtttcccctc 63
Query: 64 tggctgccaattccataggtcacaggtatgttc 96
||||||||||| ||||||| ||||||||||||
Sbjct: 64 tggctgccaatggcataggtgacaggtatgttc 96
>RF00130;mir-192;ABQO011016737.1/1874-1763 9315:Macropus eugenii
(tammar wallaby)
Length = 112
Score = 101 bits (51), Expect = 2e-21
Identities = 84/91 (92%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 19 gggctctgacct-atgaattgacagccagtgctctcgtctcccct-ctggctgccaattc 76
|||||||||||| ||||||||||||||||| ||| |||||| | ||||||||||||||
Sbjct: 20 gggctctgaccttatgaattgacagccagtactcat-tctccctttctggctgccaattc 78
Query: 77 cataggtcacaggtatgttcgcctcaatgcc 107
|||||||||||||||||||||||||||||||
Sbjct: 79 cataggtcacaggtatgttcgcctcaatgcc 109
>RF00130;mir-192;BX248510.4/109218-109112 7955:Danio rerio
(zebrafish)
Length = 107
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 tgacctatgaattgacagccagtg 48
||||||||||||||||||||||||
Sbjct: 24 tgacctatgaattgacagccagtg 47
>RF00130;mir-192;CAAE01014650.1/773661-773759 99883:Tetraodon
nigroviridis
Length = 99
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 25 tgacctatgaattgacagccagt 47
|||||||||||||||||||||||
Sbjct: 18 tgacctatgaattgacagccagt 40
>RF00130;mir-192;CAAB01000046.1/113260-113358 31033:Takifugu
rubripes
Length = 99
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 25 tgacctatgaattgacagccagt 47
|||||||||||||||||||||||
Sbjct: 18 tgacctatgaattgacagccagt 40
>RF00130;mir-192;BAAF04033818.1/3323-3429 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 25 tgacctatgaattgacagccagt 47
|||||||||||||||||||||||
Sbjct: 25 tgacctatgaattgacagccagt 47
