miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;ABRQ01306924.1/1769-1693 9813:Procavia capensis
(cape rock hyrax)
Length = 77
Score = 125 bits (63), Expect = 1e-28
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 9 ctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgtctggta 68
||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 3 ctgtgggcatcttaccggacagtgctggatttctcagctagactctaacactgtctggta 62
Query: 69 acgatgttcaaaggt 83
|||||||||||||||
Sbjct: 63 acgatgttcaaaggt 77
>RF00241;mir-8;AALT01163752.1/983-908 42254:Sorex araneus
(European shrew)
Length = 76
Score = 99.6 bits (50), Expect = 6e-21
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 9 ctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgtctggta 68
||||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||
Sbjct: 3 ctgtgagcatcttaccggacagtgctggacttacg-gcttggctctaacactgtctggta 61
Query: 69 acgatgttcaaagg 82
||||||||||||||
Sbjct: 62 acgatgttcaaagg 75
>RF00241;mir-8;AANN01836629.1/1372-1445 9365:Erinaceus europaeus
(western European hedgehog)
Length = 74
Score = 87.7 bits (44), Expect = 2e-17
Identities = 69/75 (92%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 9 ctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgtctggta 68
||||| |||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct: 3 ctgtgggcatcttaccggacagtgctggattttc--gctc-actctaacactgtctggta 59
Query: 69 acgatgttcaaaggt 83
|||||||||||||||
Sbjct: 60 acgatgttcaaaggt 74
>RF00241;mir-8;AAGW01121226.1/219-144 9986:Oryctolagus cuniculus
(rabbit)
Length = 76
Score = 67.9 bits (34), Expect = 2e-11
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 9 ctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgtctggta 68
||||| ||||||||| ||||||||||||||| | | || || ||||||||||||||||||
Sbjct: 3 ctgtgggcatcttactggacagtgctggatt-ctcggcatggctctaacactgtctggta 61
Query: 69 acgatg 74
||||||
Sbjct: 62 acgatg 67
>RF00241;mir-8;AAWZ01036826.1/12431-12507 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 52 tctaacactgtctggtaacgatgttcaaagg 82
|||||||||||||||||||||||||||||||
Sbjct: 46 tctaacactgtctggtaacgatgttcaaagg 76
>RF00241;mir-8;AAPN01278104.1/1392-1318 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 50 actctaacactgtctggtaacgatgttcaa 79
||||||||||||||||||||||||||||||
Sbjct: 42 actctaacactgtctggtaacgatgttcaa 71
>RF00241;mir-8;AADN02040853.1/32451-32527 9031:Gallus gallus
(chicken)
Length = 77
Score = 60.0 bits (30), Expect = 5e-09
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 9 ctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgtctggta 68
||||| ||||||||| |||||||||||||||| | | | |||||||||||||||||
Sbjct: 3 ctgtgggcatcttactagacagtgctggatttcttggatctattctaacactgtctggta 62
Query: 69 acgatgttcaaagg 82
|||||||| |||||
Sbjct: 63 acgatgtttaaagg 76
>RF00241;mir-8;BAAE01261092.1/898-975 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 ctctaacactgtctggtaacgatgtt 76
||||||||||||||||||||||||||
Sbjct: 46 ctctaacactgtctggtaacgatgtt 71
>RF00241;mir-8;CR925720.9/83600-83676 7955:Danio rerio (zebrafish)
Length = 77
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 tctaacactgtctggtaacgatgtt 76
|||||||||||||||||||||||||
Sbjct: 46 tctaacactgtctggtaacgatgtt 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 catcttaccggacagtgctgga 37
||||||||||||||||||||||
Sbjct: 10 catcttaccggacagtgctgga 31
>RF00241;mir-8;AANH01002761.1/40227-40150 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 tctaacactgtctggtaacgatgtt 76
|||||||||||||||||||||||||
Sbjct: 47 tctaacactgtctggtaacgatgtt 71
>RF00241;mir-8;AAVX01056733.1/885-961 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 tctaacactgtctggtaacgatgtt 76
|||||||||||||||||||||||||
Sbjct: 46 tctaacactgtctggtaacgatgtt 70
>RF00241;mir-8;CU855953.4/78055-77979 7955:Danio rerio (zebrafish)
Length = 77
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 tctaacactgtctggtaacgatg 74
|||||||||||||||||||||||
Sbjct: 46 tctaacactgtctggtaacgatg 68
