miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 107 bits (54), Expect = 3e-23
Identities = 80/88 (90%), Gaps = 3/88 (3%)
Strand = Plus / Minus
Query: 8 gtactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacac 67
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 88 gtactccctctgtaaagaaatataagagtgtttagatcactactttagtgatctaaacac 29
Query: 68 tctgaacatttctttacagagggagtac 95
| |||||| ||||| ||||||||||
Sbjct: 28 t---tacatttatttacggagggagtac 4
Score = 79.8 bits (40), Expect = 6e-15
Identities = 80/91 (87%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 5 acagtactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaa 64
||||||||||||||||||| |||| |||| | |||||||||||| ||||||||||||
Sbjct: 1 acagtactccctccgtaaataaatgtaagtg--tttagatcactaaagtagtgatctaaa 58
Query: 65 cactctgaacatttctttacagagggagtac 95
|||||| | |||||||||||||||||||||
Sbjct: 59 cactct-tatatttctttacagagggagtac 88
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 103 bits (52), Expect = 4e-22
Identities = 80/88 (90%), Gaps = 1/88 (1%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacact 68
||||||||||||||||||||||||||| |||||||| ||||||||||||||||| || ||
Sbjct: 89 tactccctccgtaaagaaatataagagtgtttagataactactttagtgatctagacgct 30
Query: 69 ctgaacatttctttacagagggagtaca 96
|| | ||||||||||||| ||||||||
Sbjct: 29 ct-tatatttctttacagaaggagtaca 3
Score = 77.8 bits (39), Expect = 2e-14
Identities = 76/87 (87%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 8 gtactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacac 67
||||||| || |||||||||||||||||||| |||||||||| |||| ||||||||||
Sbjct: 4 gtactccttctgtaaagaaatataagagcgtctagatcactaaagtagttatctaaacac 63
Query: 68 tctgaacatttctttacagagggagta 94
||| | |||||||||| |||||||||
Sbjct: 64 tct-tatatttctttacggagggagta 89
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 99.6 bits (50), Expect = 7e-21
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Minus
Query: 13 ccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacactctga 72
||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 85 ccctctgtaaagaaatataagagcgtttagatcactacttcagtgatctaaacgctct-t 27
Query: 73 acatttctttacagagggagta 94
| ||||||||||||||| ||||
Sbjct: 26 atatttctttacagaggtagta 5
Score = 75.8 bits (38), Expect = 1e-13
Identities = 72/82 (87%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacact 68
|||| |||| |||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 5 tactacctctgtaaagaaatataagagcgtttagatcactgaagtagtgatctaaacgct 64
Query: 69 ctgaacatttctttacagaggg 90
|| | ||||||||||||||||
Sbjct: 65 ct-tatatttctttacagaggg 85
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 91.7 bits (46), Expect = 2e-18
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacact 68
|||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||| ||
Sbjct: 5 tactccctccgtaaagaaatataagagcgtttaggtcactacttgagtgatctgaacgct 64
Query: 69 ct 70
||
Sbjct: 65 ct 66
Score = 48.1 bits (24), Expect = 2e-05
Identities = 64/76 (84%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 19 gtaaagaaatataagagcgtttagatcactactttagtgatctaaacactctgaacattt 78
||||| ||||||||||||||| |||||||| |||||| |||||| |||| | ||||
Sbjct: 79 gtaaacaaatataagagcgttcagatcactcaagtagtgacctaaacgctct-tatattt 21
Query: 79 ctttacagagggagta 94
|||||| |||||||||
Sbjct: 20 ctttacggagggagta 5
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 91.7 bits (46), Expect = 2e-18
Identities = 58/62 (93%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacact 68
||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaacactattttagtgatctaaacact 30
Query: 69 ct 70
||
Sbjct: 29 ct 28
Score = 46.1 bits (23), Expect = 9e-05
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 8 gtactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacac 67
|||||||||| |||| |||||||||| ||||||||||||| ||||| ||||||| |
Sbjct: 4 gtactccctctataaaccaatataagagtgtttagatcactaaaatagtgttctaaacgc 63
Query: 68 tct 70
|||
Sbjct: 64 tct 66
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 91.7 bits (46), Expect = 2e-18
Identities = 80/90 (88%), Gaps = 1/90 (1%)
Strand = Plus / Minus
Query: 6 cagtactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaac 65
||||| |||||| ||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 92 cagtagtccctcagtaaagaaatataagagcgtttagatcactattttagagatctaaac 33
Query: 66 actctgaacatttctttacagagggagtac 95
| || | |||| ||||||||||||||||
Sbjct: 32 gccct-tatatttgtttacagagggagtac 4
Score = 65.9 bits (33), Expect = 9e-11
Identities = 73/85 (85%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 7 agtactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaaca 66
||||||||||| ||||| ||||||||| ||||||||||| ||| |||||||||||||
Sbjct: 3 agtactccctctgtaaacaaatataagggcgtttagatctctaaaatagtgatctaaacg 62
Query: 67 ctctgaacatttctttacagaggga 91
|||| | |||||||||| ||||||
Sbjct: 63 ctct-tatatttctttactgaggga 86
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 91.7 bits (46), Expect = 2e-18
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacact 68
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 5 tactccctccgtaaattaatataagagcgtttagattactactttagtgatctaaacgct 64
Query: 69 ct 70
||
Sbjct: 65 ct 66
Score = 46.1 bits (23), Expect = 9e-05
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 28 tataagagcgtttagatcactactttagtgatctaaacactct 70
|||||||||||||||||||||| |||| |||||||| ||||
Sbjct: 70 tataagagcgtttagatcactaaagtagtaatctaaacgctct 28
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 89.7 bits (45), Expect = 6e-18
Identities = 79/89 (88%), Gaps = 1/89 (1%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacact 68
||||||||| |||||||||||||||| | ||||||| ||||||||||||||||||||| |
Sbjct: 89 tactccctctgtaaagaaatataagatcatttagataactactttagtgatctaaacatt 30
Query: 69 ctgaacatttctttacagagggagtacat 97
|| | |||||| ||| ||||||||||||
Sbjct: 29 ct-tatatttctgtacggagggagtacat 2
Score = 61.9 bits (31), Expect = 1e-09
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 8 gtactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacac 67
|||||||||||||| |||||||||||| ||||||||||||| |||| |||||||
Sbjct: 4 gtactccctccgtacagaaatataagaatgtttagatcactaaagtagttatctaaatga 63
Query: 68 tctgaacatttctttacagagggagta 94
||| | ||||||||||||||||||||
Sbjct: 64 tct-tatatttctttacagagggagta 89
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 87.7 bits (44), Expect = 3e-17
Identities = 78/88 (88%), Gaps = 1/88 (1%)
Strand = Plus / Minus
Query: 8 gtactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacac 67
|||||||||| ||||||||||||||||| ||||||| |||||||||||| ||||||| |
Sbjct: 90 gtactccctctataaagaaatataagagcatttagataactactttagtgctctaaacgc 31
Query: 68 tctgaacatttctttacagagggagtac 95
||| | |||||||||| ||||||||||
Sbjct: 30 tct-tatatttctttaccgagggagtac 4
Score = 79.8 bits (40), Expect = 6e-15
Identities = 80/92 (86%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 7 agtactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaaca 66
||||||||||| ||||||||||||||||||||||||| ||||| |||| |||||||
Sbjct: 3 agtactccctcggtaaagaaatataagagcgtttagagcactaaagtagttatctaaatg 62
Query: 67 ctctgaacatttctttacagagggagtacata 98
|||| | ||||||||| ||||||||||||||
Sbjct: 63 ctct-tatatttctttatagagggagtacata 93
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 87.7 bits (44), Expect = 3e-17
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 19 gtaaagaaatataagagcgtttagatcactactttagtgatctaaacactct 70
||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 15 gtaaacaaatataagagcgtttagatcactactttagtgatctagacactct 66
Score = 60.0 bits (30), Expect = 6e-09
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacact 68
||||| ||||| ||||||||||||||| || |||||||||| ||||||||||||| ||
Sbjct: 89 tactcactccgcaaagaaatataagagtgtctagatcactaaagtagtgatctaaacgct 30
Query: 69 ct 70
||
Sbjct: 29 ct 28
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 81.8 bits (41), Expect = 2e-15
Identities = 44/45 (97%)
Strand = Plus / Minus
Query: 26 aatataagagcgtttagatcactactttagtgatctaaacactct 70
|||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 72 aatataagagcgtttagatcactactttagtgatctaaacgctct 28
Score = 67.9 bits (34), Expect = 2e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacact 68
||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgct 64
Query: 69 ct 70
||
Sbjct: 65 ct 66
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 81.8 bits (41), Expect = 2e-15
Identities = 77/88 (87%), Gaps = 7/88 (7%)
Strand = Plus / Minus
Query: 7 agtactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaaca 66
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 85 agtactccctctgtaaagaaatataagagcgtttagatcacta------tgatctaaacg 32
Query: 67 ctctgaacatttctttacagagggagta 94
|||| | ||||||||||||||||||||
Sbjct: 31 ctct-tatatttctttacagagggagta 5
Score = 79.8 bits (40), Expect = 6e-15
Identities = 76/87 (87%), Gaps = 7/87 (8%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacact 68
||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 5 tactccctctgtaaagaaatataagagcgtttagatca------tagtgatctaaacgct 58
Query: 69 ctgaacatttctttacagagggagtac 95
|| | |||||||||||||||||||||
Sbjct: 59 ct-tatatttctttacagagggagtac 84
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 79.8 bits (40), Expect = 6e-15
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaa 64
||||||||||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagattactactttagtgatctaaa 60
Score = 46.1 bits (23), Expect = 9e-05
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 8 gtactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacac 67
|||||||||| ||||| ||||||| | | |||||||||||| |||| ||||||||||
Sbjct: 90 gtactccctctgtaaactaatataaaaacatttagatcactaaagtagtaatctaaacac 31
Query: 68 tct 70
|||
Sbjct: 30 tct 28
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 79.8 bits (40), Expect = 6e-15
Identities = 52/56 (92%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaa 64
||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagattactattttagtgatctaaa 34
Score = 52.0 bits (26), Expect = 1e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacact 68
||||||||| ||||| ||||||||||| |||||||||||| |||| |||||||| ||
Sbjct: 5 tactccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgct 64
Query: 69 ct 70
||
Sbjct: 65 ct 66
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 77.8 bits (39), Expect = 2e-14
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 8 gtactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacac 67
|||||||||||||||| |||||||||| |||| |||||||| ||||||||||||||| |
Sbjct: 4 gtactccctccgtaaattaatataagagtgttttgatcactattttagtgatctaaacgc 63
Query: 68 tct 70
|||
Sbjct: 64 tct 66
Score = 65.9 bits (33), Expect = 9e-11
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 10 actccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacactc 69
|||||||| ||||| |||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 88 actccctcagtaaactaatataagagcgtttagatcactaaaatagtgatcaaaacactc 29
Query: 70 t 70
|
Sbjct: 28 t 28
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 77.8 bits (39), Expect = 2e-14
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaa 63
||||||||| ||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgcttagatcactactttagtgatctaa 59
Score = 54.0 bits (27), Expect = 4e-07
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaa 63
||||||||| ||||| |||||||||||| ||||||||||| |||||||||||
Sbjct: 89 tactccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaa 35
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 75.8 bits (38), Expect = 1e-13
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacact 68
||||||||| ||||| ||||||||||| || |||||||||||||||||||||||| ||
Sbjct: 5 tactccctctgtaaactaatataagagcattcagatcactactttagtgatctaaatgct 64
Query: 69 ctgaacatttctttacagagggagta 94
|| | |||||||||| |||||||||
Sbjct: 65 ct-tatatttctttacggagggagta 89
Score = 73.8 bits (37), Expect = 4e-13
Identities = 40/41 (97%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
|||||||||||||||||||||||||||| ||||||||||||
Sbjct: 89 tactccctccgtaaagaaatataagagcatttagatcacta 49
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 8 gtactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaa 64
|||||||||| ||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct: 90 gtactccctctgtaaactaatataagaccttttagatcactactttagtgatctaaa 34
Score = 44.1 bits (22), Expect = 3e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 7 agtactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaa 64
|||| |||||| ||||| ||||||||| | |||||||||||| ||||||||||||
Sbjct: 3 agtattccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaa 60
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 14 cctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacactct 70
|||||||||| |||||||||||||||||||||||| |||||||||| |||| ||||
Sbjct: 84 cctccgtaaactaatataagagcgtttagatcactattttagtgatccaaacgctct 28
Score = 60.0 bits (30), Expect = 6e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacact 68
||||||||| ||||| ||||||||||||||| |||||||| ||||||||||||| ||
Sbjct: 5 tactccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaacgct 64
Query: 69 ct 70
||
Sbjct: 65 ct 66
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 71.9 bits (36), Expect = 1e-12
Identities = 52/56 (92%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaa 64
||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||
Sbjct: 87 tactccctccgtaaactaatataagagcatttagatcactac-ttagtgatctaaa 33
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 7 agtactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaaca 66
||||||||||| ||||| |||||||||||||||||||||||| |||||| |||||||
Sbjct: 3 agtactccctctgtaaactaatataagagcgtttagatcactattttagtattctaaacg 62
Query: 67 ctct 70
||||
Sbjct: 63 ctct 66
Score = 61.9 bits (31), Expect = 1e-09
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacact 68
||||||||||||||| |||||||||||||||||| |||| ||||||||||||| ||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacgct 30
Query: 69 ctgaacatttctttacagagggagtac 95
|| | ||| ||||||||||||||||
Sbjct: 29 ct-tatattagtttacagagggagtac 4
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 69.9 bits (35), Expect = 6e-12
Identities = 56/62 (90%), Gaps = 2/62 (3%)
Strand = Plus / Minus
Query: 7 agtactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaaca 66
||||||||||||||||| |||||||||||||||||| |||| |||||| |||||||||
Sbjct: 89 agtactccctccgtaaactaatataagagcgtttaga--actattttagttatctaaaca 32
Query: 67 ct 68
||
Sbjct: 31 ct 30
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 67.9 bits (34), Expect = 2e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 7 agtactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaa 64
||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||
Sbjct: 3 agtactccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaa 60
Score = 60.0 bits (30), Expect = 6e-09
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacact 68
|||| |||| ||||| ||||||||||| |||||||||||| |||||||| |||||| ||
Sbjct: 89 tacttcctctgtaaactaatataagagcatttagatcactattttagtgacctaaacgct 30
Query: 69 ct 70
||
Sbjct: 29 ct 28
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 67.9 bits (34), Expect = 2e-11
Identities = 77/89 (86%), Gaps = 3/89 (3%)
Strand = Plus / Minus
Query: 7 agtactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaaca 66
||||||||||||||||| ||||||| |||||||||| |||| |||||| |||||||||
Sbjct: 89 agtactccctccgtaaactaatataatagcgtttaga--actattttagttatctaaaca 32
Query: 67 ctctgaacatttctttacagagggagtac 95
|||| | ||| ||||||||||||||||
Sbjct: 31 ctct-tatattagtttacagagggagtac 4
Score = 46.1 bits (23), Expect = 9e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 7 agtactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||||| ||||| |||||||||| |||||||| ||||
Sbjct: 3 agtactccctctgtaaactaatataagagtgtttagataacta 45
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 65.9 bits (33), Expect = 9e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgtttagatcacta 45
Score = 58.0 bits (29), Expect = 2e-08
Identities = 77/92 (83%), Gaps = 7/92 (7%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactac------tttagtgatcta 62
|||||||||| |||||||||||||| | ||||||||||||| ||||||||||||
Sbjct: 95 tactccctccacaaagaaatataagatcatttagatcactactactattttagtgatcta 36
Query: 63 aacactctgaacatttctttacagagggagta 94
||| ||| | ||||||||||||||||||||
Sbjct: 35 aacgatct-tatatttctttacagagggagta 5
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 63.9 bits (32), Expect = 4e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaa 64
||||||||||||||| |||||||||| ||||||||||||| |||| |||| ||||
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagatcactattttaatgatttaaa 60
Score = 52.0 bits (26), Expect = 1e-06
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacact 68
||||||||| ||||| ||||||||||| |||| |||| || ||||||||||||||||
Sbjct: 89 tactccctcggtaaactaatataagagcatttaaatcattaaaatagtgatctaaacact 30
Query: 69 ct 70
||
Sbjct: 29 ct 28
>RF00906;MIR1122;EU835198.1/64297-64202 85692:Triticum turgidum
subsp. dicoccoides
Length = 96
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 16 tccgtaaagaaatataagagcgtttagatcactact 51
||||||||||||||||||| ||||||||||||||||
Sbjct: 12 tccgtaaagaaatataagaacgtttagatcactact 47
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
|||||| |||||||||||||| |||||||| ||||||||||
Sbjct: 92 tactccatccgtaaagaaatacaagagcgtctagatcacta 52
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 12 tccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacactctg 71
||||| |||||| ||||||||||| |||||| ||||| |||||| ||||||| |||||
Sbjct: 86 tcccttcgtaaactaatataagagcatttagaacactattttagtaatctaaatactct- 28
Query: 72 aacatttctttacagagggagtacata 98
| ||| |||||||||||||||||||
Sbjct: 27 tatattagtttacagagggagtacata 1
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 61.9 bits (31), Expect = 1e-09
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 7 agtactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaac 65
||||||||||| ||||| ||||||||||| ||||||||||||| ||| ||||||||||
Sbjct: 90 agtactccctctgtaaactaatataagagcatttagatcactac-ttaatgatctaaac 33
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 61.9 bits (31), Expect = 1e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 26 aatataagagcgtttagatcactactttagtgatctaaa 64
|||||||||||||||||||||||| |||| |||||||||
Sbjct: 67 aatataagagcgtttagatcactattttaatgatctaaa 105
Score = 60.0 bits (30), Expect = 6e-09
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacact 68
||||||||||||||| ||||||||||| ||||||||| || ||||||||||||| ||
Sbjct: 134 tactccctccgtaaactaatataagagcatttagatcattaaaatagtgatctaaacgct 75
Query: 69 ct 70
||
Sbjct: 74 ct 73
Score = 58.0 bits (29), Expect = 2e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 7 agtactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaaca 66
||||||||||| ||||| ||||||||||||||||| ||| | |||| |||||||||||
Sbjct: 3 agtactccctctgtaaactaatataagagcgtttaggtcataattttaatgatctaaaca 62
Query: 67 c 67
|
Sbjct: 63 c 63
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 60.0 bits (30), Expect = 6e-09
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 7 agtactccctccgtaaagaaatataagagcgtttagatcactactttagt 56
||||||||||| ||||| |||||||||| ||||||||||||| ||||||
Sbjct: 3 agtactccctctgtaaactaatataagagtgtttagatcactagtttagt 52
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 60.0 bits (30), Expect = 6e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 7 agtactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaa 64
||||||||||| ||||| ||||||||||| |||||||||||| ||||||||||||
Sbjct: 3 agtactccctctgtaaactaatataagagcttttagatcactaaagtagtgatctaaa 60
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 38 tttagatcactactttagtgatctaaa 64
|||||||||||||||||||||||||||
Sbjct: 60 tttagatcactactttagtgatctaaa 34
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaac 65
||||||||| ||||| ||||||||| |||||||||||||| |||||| |||||||
Sbjct: 89 tactccctctgtaaactaatataagaacgtttagatcactattttagtattctaaac 33
Score = 52.0 bits (26), Expect = 1e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 8 gtactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaac 65
|||||||||||||||| ||||||| |||||||||| |||| |||||||||||||
Sbjct: 4 gtactccctccgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaac 61
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 10 actccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaacactc 69
|||||||||||||| |||||||||| ||||||||||| | |||| |||||| ||| |||
Sbjct: 88 actccctccgtaaactaatataagagagtttagatcacaattttaatgatctcaacgctc 29
Query: 70 t 70
|
Sbjct: 28 t 28
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 56.0 bits (28), Expect = 9e-08
Identities = 52/59 (88%), Gaps = 2/59 (3%)
Strand = Plus / Minus
Query: 8 gtactccctccgtaaagaaatataagagcgtttagatcactact--ttagtgatctaaa 64
|||||||||| ||||| ||||||||| | |||||||||||||| |||||||||||||
Sbjct: 92 gtactccctctgtaaactaatataagaccttttagatcactactacttagtgatctaaa 34
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 56.0 bits (28), Expect = 9e-08
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 7 agtactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaaca 66
||||||||| | ||||| ||||||| ||| |||||| |||||||||||| ||||||||
Sbjct: 91 agtactccccctgtaaactaatataaaagcatttagaacactactttagtaatctaaacg 32
Query: 67 ctct 70
||||
Sbjct: 31 ctct 28
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||| ||||| ||||||||||||||||||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagattacta 45
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 56.0 bits (28), Expect = 9e-08
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaa 64
|||||||||| |||| ||||||||||| |||||| |||||||| ||| |||||||
Sbjct: 89 tactccctccataaactaatataagagcatttagaacactacttcagtaatctaaa 34
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactact 51
||||||||| || || |||||| ||||||||||||||||||||
Sbjct: 5 tactccctctgtgaataaatatgagagcgtttagatcactact 47
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
|||||||| ||||| ||||||||||||||||||||||||
Sbjct: 92 tactccctatgtaaaataatataagagcgtttagatcacta 52
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 11 ctccctccgtaaagaaatataagagcgtttagatcacta 49
||||||| |||||||||||||||| | ||||||||||||
Sbjct: 76 ctccctctgtaaagaaatataagatcatttagatcacta 38
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgttta 41
||||||||| |||||||||||||||| ||||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgttta 37
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 12 tccctccgtaaagaaatataagagcgtttaga 43
|||||||||||| ||||||||||||||||||
Sbjct: 8 tccctccgtaaactaatataagagcgtttaga 39
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactactttagtgatctaaa 64
||||||||| ||||| ||||||| ||| |||||||||||| |||| | |||||||
Sbjct: 5 tactccctctgtaaactaatataaaagcatttagatcactattttaataatctaaa 60
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 7 agtactccctccgtaaagaaatataagagcgttt 40
||||||||||| ||||| |||||||||||||||
Sbjct: 98 agtactccctctgtaaactaatataagagcgttt 65
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgt 38
||||||||||||||| |||||||||||||
Sbjct: 62 tactccctccgtaaactaatataagagcgt 33
