miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28245_pbi-mir-510:mirbase
Length = 98
Score = 157 bits (79), Expect = 2e-39
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 16 gtatcctactccggagagtggcaatcacatataattaagtgtgattgaaacctctaagag 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 gtatcctactccggagagtggcaatcacatataattaagtgtgattgaaacctctaagag 75
Query: 76 tggagtaacacatgacatgtact 98
|||||||||||||||| ||||||
Sbjct: 76 tggagtaacacatgacgtgtact 98
>31387_ssy-mir-510:mirbase
Length = 98
Score = 151 bits (76), Expect = 1e-37
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 19 tcctactccggagagtggcaatcacatataattaagtgtgattgaaacctctaagagtgg 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 tcctactccggagagtggcaatcacatataattaagtgtgattgaaacctctaagagtgg 78
Query: 79 agtaacacatgacatgtact 98
| ||||||||||||||||||
Sbjct: 79 aataacacatgacatgtact 98
>28713_hsa-mir-510:mirbase
Length = 74
Score = 111 bits (56), Expect = 9e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 19 tcctactccggagagtggcaatcacatataattaagtgtgattgaaacctctaagagtgg 78
|||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 7 tcctactcaggagagtggcaatcacatgtaattaggtgtgattgaaacctctaagagtgg 66
Query: 79 agtaacac 86
||||||||
Sbjct: 67 agtaacac 74
>30416_ptr-mir-510:mirbase
Length = 97
Score = 111 bits (56), Expect = 9e-26
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 19 tcctactccggagagtggcaatcacatataattaagtgtgattgaaacctctaagagtgg 78
|||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 19 tcctacccaggagagtggcaatcacatataattaggtgtgattgaaacctctaagagtgt 78
Query: 79 agtaacacatgacatgtact 98
||| ||||||||||||||||
Sbjct: 79 agt-acacatgacatgtact 97
>27527_age-mir-510:mirbase
Length = 99
Score = 99.6 bits (50), Expect = 4e-22
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 21 ctactccggagagtggcaatcacatataattaagtgtgattgaaacctctaagagtggag 80
||||||| |||||| |||||||| ||||||||| ||||||||||||||| ||||| |||
Sbjct: 20 ctactccagagagtagcaatcacgtataattaaaggtgattgaaacctctgagagtagag 79
Query: 81 taacacatgacatgtact 98
||||||||||||||||||
Sbjct: 80 taacacatgacatgtact 97
>31057_ppy-mir-510:mirbase
Length = 76
Score = 93.7 bits (47), Expect = 2e-20
Identities = 65/70 (92%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 19 tcctactccggagagtggcaatcacatat--aattaagtgtgattgaaacctctaagagt 76
||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 7 tcctactccggagagtggcaatcacatgttcaatcaagtgtgattgaaacctctaagagt 66
Query: 77 ggagtaacac 86
||| ||||||
Sbjct: 67 ggaataacac 76
>26873_cfa-mir-514:mirbase
Length = 77
Score = 58.0 bits (29), Expect = 1e-09
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 20 cctactccggagagtggcaatcacatataattaagtgtgattgaaacctctaagagtgga 79
|||||||| |||||||||||||| | |||||| ||||||||| |||||| |||||||
Sbjct: 5 cctactccagagagtggcaatcatttgtaattatatgtgattgacacctctgtgagtgga 64
Query: 80 gtaacacatgaca 92
|||| |||||||
Sbjct: 65 gtaatgcatgaca 77
>31068_ppy-mir-514-1:mirbase
Length = 98
Score = 58.0 bits (29), Expect = 1e-09
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 20 cctactccggagagtggcaatcacatataattaagtgtgattgaaacctctaagagtgga 79
||||||| ||||||||||||||| | ||||||| | ||||||| |||||| |||| ||
Sbjct: 20 cctactctggagagtggcaatcatgtgtaattaaatttgattgacacctctgtgagtaga 79
Query: 80 gtaacacatgaca 92
||||| |||||||
Sbjct: 80 gtaacgcatgaca 92
>31069_ppy-mir-514-2:mirbase
Length = 88
Score = 58.0 bits (29), Expect = 1e-09
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 20 cctactccggagagtggcaatcacatataattaagtgtgattgaaacctctaagagtgga 79
||||||| ||||||||||||||| | ||||||| | ||||||| |||||| |||| ||
Sbjct: 15 cctactctggagagtggcaatcatgtgtaattaaatttgattgacacctctgtgagtaga 74
Query: 80 gtaacacatgaca 92
||||| |||||||
Sbjct: 75 gtaacgcatgaca 87
>31070_ppy-mir-514-3:mirbase
Length = 88
Score = 58.0 bits (29), Expect = 1e-09
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 20 cctactccggagagtggcaatcacatataattaagtgtgattgaaacctctaagagtgga 79
||||||| ||||||||||||||| | ||||||| | ||||||| |||||| |||| ||
Sbjct: 15 cctactctggagagtggcaatcatgtgtaattaaatttgattgacacctctgtgagtaga 74
Query: 80 gtaacacatgaca 92
||||| |||||||
Sbjct: 75 gtaacgcatgaca 87
>27221_eca-mir-509:mirbase
Length = 98
Score = 42.1 bits (21), Expect = 7e-05
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 32 agtggcaatcacatataattaagtgtgattgaaacctctaagagtggagtaacacatgac 91
||||||||||| ||||||||| ||||||| |||||| |||| |||||||||||||
Sbjct: 30 agtggcaatcatgtataattaaaaatgattgacacctctgcaagtgtagtaacacatgac 89
Query: 92 a 92
|
Sbjct: 90 a 90
>28729_hsa-mir-514b:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 57 tgattgaaacctctaagagtggagtaacacatg 89
||||||| |||||| |||||||||||||||||
Sbjct: 48 tgattgacacctctgtgagtggagtaacacatg 80
>28730_hsa-mir-514b:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 57 tgattgaaacctctaagagtggagtaacacatg 89
||||||| |||||| |||||||||||||||||
Sbjct: 48 tgattgacacctctgtgagtggagtaacacatg 80
