miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00639;mir-515;AANU01181649.1/11480-11568 9544:Macaca mulatta
(rhesus monkey)
Length = 89
Score = 176 bits (89), Expect = 3e-44
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 tctcaggctgtgaccgtctcgaggaaagaagcactttctgttgtctaaagaaaaggaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctcaggctgtgaccgtctcgaggaaagaagcactttctgttgtctaaagaaaaggaagt 60
Query: 61 gtttccttcccgagggttacggtttgaga 89
|||||||||||||||||||||||||||||
Sbjct: 61 gtttccttcccgagggttacggtttgaga 89
>RF00639;mir-515;EU086470.1/108181-108266 61621:Rhinopithecus
bieti (Black snub-nosed monkey)
Length = 86
Score = 75.8 bits (38), Expect = 8e-14
Identities = 57/62 (91%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 1 tctcaggctgtgaccgtctcgaggaaagaagcactttctgttgtc-taaagaaaaggaag 59
||||||||||||||| ||| |||| |||||||||||||||||||| |||||||||| |||
Sbjct: 1 tctcaggctgtgaccatctagaggtaagaagcactttctgttgtcttaaagaaaagaaag 60
Query: 60 tg 61
||
Sbjct: 61 tg 62
>RF00639;mir-515;AANU01181652.1/3357-3446 9544:Macaca mulatta
(rhesus monkey)
Length = 90
Score = 75.8 bits (38), Expect = 8e-14
Identities = 78/90 (86%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 1 tctcaggctgtgaccgtctcgaggaaagaagcactttctgttgtct-aaagaaaaggaag 59
||||||||||||||| ||| |||| ||||||||||||||||| | | ||||||||| |||
Sbjct: 1 tctcaggctgtgaccatctggaggtaagaagcactttctgttttgtgaaagaaaagaaag 60
Query: 60 tgtttccttcccgagggttacggtttgaga 89
|| |||||| | ||||||||| |||||||
Sbjct: 61 tgcttcctttcagagggttactctttgaga 90
>RF00639;mir-515;AANU01181649.1/2975-3064 9544:Macaca mulatta
(rhesus monkey)
Length = 90
Score = 75.8 bits (38), Expect = 8e-14
Identities = 78/90 (86%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 1 tctcaggctgtgaccgtctcgaggaaagaagcactttctgttgtct-aaagaaaaggaag 59
|||||||||||||| ||| |||| |||||| ||| ||||||||| ||||||||| |||
Sbjct: 1 tctcaggctgtgactatctggaggtaagaagtgcttactgttgtcttaaagaaaagaaag 60
Query: 60 tgtttccttcccgagggttacggtttgaga 89
|| || ||| ||||||||||||||||||||
Sbjct: 61 tgctttctttccgagggttacggtttgaga 90
>RF00665;mir-290;AANU01181659.1/9779-9861 9544:Macaca mulatta
(rhesus monkey)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 72/86 (83%), Gaps = 4/86 (4%)
Strand = Plus / Plus
Query: 3 tcaggctgtgaccgtctcgaggaaagaagcactttctgttgtct-aaagaaaaggaagtg 61
||||||||||||| ||| |||| ||||| |||||||| |||| ||||||||| |||||
Sbjct: 1 tcaggctgtgaccctctagagg---gaagcgctttctgtggtctgaaagaaaagaaagtg 57
Query: 62 tttccttcccgagggttacggtttga 87
|||||| ||||||||| ||||||
Sbjct: 58 cttccttttagagggttaccgtttga 83
>RF00639;mir-515;AANU01181659.1/6633-6719 9544:Macaca mulatta
(rhesus monkey)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 41/46 (89%), Gaps = 3/46 (6%)
Strand = Plus / Plus
Query: 1 tctcaggctgtgaccgtctcgaggaaagaagcactttctgttgtct 46
||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct: 1 tctcaggctgtgaccctctagagg---gaagcactttctgttgtct 43
>RF00639;mir-515;EU086472.1/72772-72860 9509:Ateles geoffroyi
(black-handed spider monkey)
Length = 89
Score = 46.1 bits (23), Expect = 7e-05
Identities = 58/67 (86%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 1 tctcaggctgtgaccgtctcgaggaaagaagcactttctgttgtct-aaagaaaaggaag 59
|||||||| ||| || ||| |||||| || |||||||||||||||| ||||||||| |||
Sbjct: 1 tctcaggcggtggccatctggaggaa-gaggcactttctgttgtctgaaagaaaagaaag 59
Query: 60 tgtttcc 66
|| ||||
Sbjct: 60 tgcttcc 66
>RF00639;mir-515;EU086472.1/34260-34346 9509:Ateles geoffroyi
(black-handed spider monkey)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 54/63 (85%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 28 gaagcactttctgttgtct-aaagaaaaggaagtgtttccttcccgagggttacggtttg 86
||||||||||||||||||| || |||||| |||||| ||| | ||||||||| |||||
Sbjct: 25 gaagcactttctgttgtctgaaggaaaagaaagtgtctccgttaagagggttactgtttg 84
Query: 87 aga 89
|||
Sbjct: 85 aga 87
>RF00639;mir-515;EU086470.1/40078-40164 61621:Rhinopithecus bieti
(Black snub-nosed monkey)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 54/63 (85%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 28 gaagcactttctgttgtct-aaagaaaaggaagtgtttccttcccgagggttacggtttg 86
|||||| |||||||||||| |||| |||| ||||| |||||| ||||||||| |||||
Sbjct: 25 gaagcaatttctgttgtctgaaaggaaagaaagtgcttcctttttgagggttactgtttg 84
Query: 87 aga 89
|||
Sbjct: 85 aga 87
>RF00639;mir-515;AANU01181661.1/14497-14582 9544:Macaca mulatta
(rhesus monkey)
Length = 86
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 29 aagcactttctgttgtctaaagaaaag 55
||||||||||||||||| |||||||||
Sbjct: 26 aagcactttctgttgtcgaaagaaaag 52
>RF00639;mir-515;CABD01614988.1/683-769 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 28 gaagcactttctgttgtct-aaagaaaaggaagtgtttcctt 68
||||| ||||||||||||| ||||||||| ||||| ||||||
Sbjct: 25 gaagcgctttctgttgtctgaaagaaaagaaagtgcttcctt 66
>RF00639;mir-515;AANU01181659.1/2591-2677 9544:Macaca mulatta
(rhesus monkey)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 39/44 (88%), Gaps = 3/44 (6%)
Strand = Plus / Plus
Query: 3 tcaggctgtgaccgtctcgaggaaagaagcactttctgttgtct 46
||||||||||||| ||| |||| |||||||||||||||||||
Sbjct: 3 tcaggctgtgaccctcttgagg---gaagcactttctgttgtct 43
