miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAGW01206554.1/1585-1664 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 139 bits (70), Expect = 6e-33
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 1 atacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaagga 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2 atacttgaggagaaattatccttggtgtgttcgctttattcgtgatgaatcatacaagga 61
Query: 61 caatttctttttgagtat 78
||||||||||||||||||
Sbjct: 62 caatttctttttgagtat 79
>RF00641;mir-154;AABR04040370.1/14458-14381 10116:Rattus
norvegicus (Norway rat)
Length = 78
Score = 77.8 bits (39), Expect = 2e-14
Identities = 69/78 (88%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 1 atacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaagga 60
||||||||||||||||||||||||||||||| || | ||| ||||||||||||||||
Sbjct: 2 atacttgaggagaaattatccttggtgtgtttgc--tcttttggatgaatcatacaaggg 59
Query: 61 caatttctttttgagtat 78
|||||||||| ||||||
Sbjct: 60 taatttcttttcgagtat 77
>RF00641;mir-154;AAIY01699599.1/4687-4765 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 73.8 bits (37), Expect = 3e-13
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 2 tacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaaggac 61
||||||||||||||||| |||||||||||| ||||||| | || |||||| |||||||
Sbjct: 3 tacttgaggagaaattacccttggtgtgttggctttatc-acgacaaatcatccaaggac 61
Query: 62 aatttctttttgagtat 78
|||||||| ||||||||
Sbjct: 62 aatttcttgttgagtat 78
>RF00641;mir-154;ABRQ01054375.1/598-677 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 61.9 bits (31), Expect = 1e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 16 ttatccttggtgtgttcgctttatttatgatgaatcatacaaggaca 62
|||||| || |||||||||||||||||||| |||||||||| |||||
Sbjct: 17 ttatccctgctgtgttcgctttatttatgacgaatcatacagggaca 63
>RF00641;mir-154;AAQR01332678.1/6090-6172 30611:Otolemur garnettii
(small-eared galago)
Length = 83
Score = 60.0 bits (30), Expect = 4e-09
Identities = 56/64 (87%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 18 atccttggtgtgttcgctttatttatgatgaatca---tacaaggacaatttctttttga 74
||||||||| |||| |||||||| |||||||||| ||||||||||||||||||| ||
Sbjct: 19 atccttggtatgtttactttatttgtgatgaatcatcatacaaggacaatttcttttaga 78
Query: 75 gtat 78
||||
Sbjct: 79 gtat 82
>RF00641;mir-154;AAGU02626699.1/1300-1379 9785:Loxodonta africana
(African savanna elephant)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 20 ccttggtgtgttcgctttatttatgatgaatcatacaa 57
|||||||| ||||||||||||||| ||||||| ||||
Sbjct: 21 ccttggtgaattcgctttatttatgttgaatcacacaa 58
>RF00641;mir-154;ABRQ01054375.1/318-394 9813:Procavia capensis
(cape rock hyrax)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 3 acttgaggagaaattatccttggtgtgttcgctttatttatg 44
|||||||||||| || |||||| |||||| ||||| ||||||
Sbjct: 4 acttgaggagaagttctccttgctgtgtttgctttgtttatg 45
