miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 65.9 bits (33), Expect = 8e-11
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 8 tactccatctgtaaagaaatatgagagtgtttagatcacta 48
|||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 87 tactccctctgtaaagaaatataagagtgtttagatcacta 47
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 60.0 bits (30), Expect = 5e-09
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 8 tactccatctgtaaagaaatatgagagtgtttagatcactat 49
|||||| ||||||||||||||| |||| ||||||||||||||
Sbjct: 83 tactccctctgtaaagaaatataagagcgtttagatcactat 42
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 8 tactccatctgtaaagaaatatgagagtgtttagatca 45
|||||| ||||||||||||||| |||| ||||||||||
Sbjct: 5 tactccctctgtaaagaaatataagagcgtttagatca 42
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 56.0 bits (28), Expect = 7e-08
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 5 aactactccatctgtaaagaaatatgagagtgtttagatcacta 48
||||||||| || |||||||||||| ||||||||||||| ||||
Sbjct: 92 aactactccctccgtaaagaaatataagagtgtttagataacta 49
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 8 tactccatctgtaaagaaatatgagagtgtttagatcacta 48
|||||| ||||||||||||||| |||| || ||||||||||
Sbjct: 5 tactccttctgtaaagaaatataagagcgtctagatcacta 45
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 18 gtaaagaaatatgagagtgtttagatcactatttt 52
|||||||||||| |||| |||||||||||||||||
Sbjct: 79 gtaaagaaatataagagcgtttagatcactatttt 45
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 7 ctactccatctgtaaagaaatatgagagtgtttagatcactatttt 52
||||||| || ||||| ||||| ||||||||||||||||||||||
Sbjct: 4 ctactccctccgtaaactaatataagagtgtttagatcactatttt 49
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 6 actactccatctgtaaagaaatatgagagtgtttagatcact 47
|||||| | ||||||||||||||| |||| ||||||||||||
Sbjct: 3 actactacctctgtaaagaaatataagagcgtttagatcact 44
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 15 tctgtaaagaaatatgagagtgtttagatcacta 48
||||||||||||||| |||| |||||||||||||
Sbjct: 82 tctgtaaagaaatataagagcgtttagatcacta 49
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 8 tactccatctgtaaagaaatatgagagtgtttagatcacta 48
|||||| ||||| || ||||||||||| |||||||||||||
Sbjct: 5 tactccctctgtgaataaatatgagagcgtttagatcacta 45
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 8 tactccatctgtaaagaaatatgagagtgtttagatcacta 48
|||||| |||||||| ||||| ||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagtgtttagatcacta 45
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 8 tactccatctgtaaagaaatatgagagtgtttagatcacta 48
|||||| ||||||||||||||| ||| |||||||||||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgtttagatcacta 45
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 8 tactccatctgtaaagaaatatgagagtgtttagatcactatttt 52
|||||| |||||||| ||||| |||| |||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactatttt 49
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 15 tctgtaaagaaatatgagagtgtttagatcacta 48
|||||||| |||||| |||| |||||||||||||
Sbjct: 12 tctgtaaacaaatataagagcgtttagatcacta 45
