miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 40 atgatctaaacgtttttatatttctttacagatggag 76
|||||||||||| | ||||||||||||||||| ||||
Sbjct: 43 atgatctaaacgctcttatatttctttacagagggag 7
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 41 tgatctaaacgtttttatatttctttacagatggag 76
||||||||||| | ||||||||||||||||| ||||
Sbjct: 46 tgatctaaacgctcttatatttctttacagagggag 81
>RF00906;MIR1122;EU835198.1/64297-64202 85692:Triticum turgidum
subsp. dicoccoides
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 41 tgatctaaacgtttttatatttctttac 68
||||||||||||| ||||||||||||||
Sbjct: 42 tgatctaaacgttcttatatttctttac 15
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 33 taaaataatgatctaaacgtttttatatttctttacagatggag 76
||||||| ||||||||||||| ||||||| |||||||| ||||
Sbjct: 44 taaaatagtgatctaaacgttcttatattagtttacagagggag 87
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 41 tgatctaaacgtttttatatttctttacagatggag 76
||||||||||| | ||||||||||||||||| ||||
Sbjct: 42 tgatctaaacgatcttatatttctttacagagggag 7
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 33 taaaataatgatctaaacgtttttatatttctttac 68
||||||| ||||||||||| | ||||||||||||||
Sbjct: 44 taaaatagtgatctaaacgctcttatatttctttac 79
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 actccctccgtaaagaaatataa 32
|||||||||||||||||||||||
Sbjct: 88 actccctccgtaaagaaatataa 66
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 actccctccgtaaagaaatataa 32
|||||||||||||||||||||||
Sbjct: 6 actccctccgtaaagaaatataa 28
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 41 tgatctaaacgtttttatatttctttacaga 71
||||||||||| | |||||||||||||||||
Sbjct: 42 tgatctaaacgctcttatatttctttacaga 12
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 41 tgatctaaacgtttttatatttctttacaga 71
||||||||||| | |||||||||||||||||
Sbjct: 52 tgatctaaacgctcttatatttctttacaga 82
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 actccctccgtaaagaaatataa 32
|||||||||||||||||||||||
Sbjct: 88 actccctccgtaaagaaatataa 66
