miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF01039;mir-937;AANU01106925.1/1175-1090 9544:Macaca mulatta
          (rhesus monkey)
          Length = 86

 Score =  170 bits (86), Expect = 2e-42
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  agcactgcccccggtgagtcagggtggggctggccccctgcttcgcgcccatccgcactc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  agcactgcccccggtgagtcagggtggggctggccccctgcttcgcgcccatccgcactc 60

                                    
Query: 61 tgactctccacctgcctgcaggagct 86
          ||||||||||||||||||||||||||
Sbjct: 61 tgactctccacctgcctgcaggagct 86




>RF01039;mir-937;CABD01151683.1/3683-3768 9595:Gorilla gorilla
          gorilla (Western lowland gorilla)
          Length = 86

 Score =  105 bits (53), Expect = 9e-23
 Identities = 59/61 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  agcactgcccccggtgagtcagggtggggctggccccctgcttcgcgcccatccgcactc 60
          ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 1  agcactgcccccggtgagtcagggtggggctggccccctgcttcgtgcccatccgcgctc 60

           
Query: 61 t 61
          |
Sbjct: 61 t 61




>RF01039;mir-937;AAQQ01060996.1/829-746 43179:Spermophilus
          tridecemlineatus (thirteen-lined ground squirrel)
          Length = 84

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                             
Query: 1  agcactgcccccggtgagtcagggtggggctggcc 35
          ||||||||||||||||||| |||| ||| ||||||
Sbjct: 1  agcactgcccccggtgagtgagggcgggactggcc 35